C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle (multivesicular body) trafficking 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620996 VTA1-202 ENSG00000009844 9606 + 6:142147162-142220946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000620996
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000620996 3.593±0.00 1.498±0.00 3.539±2.46 2.030±0.85 2.292±0.79 2.253±1.30 4.112±1.77 2.200±1.19 2.592±0.04 2.909±1.88 7.648±2.66 4.302±0.47 3.550±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030O CIL_00030O_0002 CGP 6:142133090-142224689
CIL_00030L CIL_00030L_0002 CGP 6:142147162-142446266

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149485 Vta1-006 protein_coding Mus_musculus 0 953
ENSMUST00000154132 Vta1-001 protein_coding Mus_musculus 0 926
ENSMUST00000020018 Vta1-002 nonsense_mediated_decay Mus_musculus 0 640

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