C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle (multivesicular body) trafficking 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367621 VTA1-002 ENSG00000009844 9606 + 6:142147257-142219067 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367621
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367621 3.756±0.00 4.594±0.00 1.075±0.00 4.397±0.76 2.813±1.34 4.312±2.09 4.267±2.46 4.790±3.31 3.800±0.76 3.191±0.70 5.447±3.21 9.582±1.90 7.890±1.31 3.904±1.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030O CIL_00030O_0002 CGP 6:142133090-142224689
CIL_00030L CIL_00030L_0002 CGP 6:142147162-142446266

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020018 Vta1-002 nonsense_mediated_decay Mus_musculus 0 965
ENSMUST00000154132 Vta1-001 protein_coding Mus_musculus 0 826
ENSMUST00000149485 Vta1-006 protein_coding Mus_musculus 0 640

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