C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle (multivesicular body) trafficking 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367630 VTA1-001 ENSG00000009844 9606 + 6:142147230-142224689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyMuscleENST00000367630
Transcript ID Brain Breast Colon Kidney Muscle
ENST00000367630 0.546±0.11 0.307±0.00 0.362±0.00 0.327±0.00 0.524±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030O CIL_00030O_0002 CGP 6:142133090-142224689
CIL_00030L CIL_00030L_0002 CGP 6:142147162-142446266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154132 Vta1-001 protein_coding Mus_musculus 0 1112
ENSMUST00000149485 Vta1-006 protein_coding Mus_musculus 0 893
ENSMUST00000020018 Vta1-002 nonsense_mediated_decay Mus_musculus 0 826

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