C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020270 Ddx50-201 ENSMUSG00000020076 10090 - 10:62616023-62651218 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020270
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020270 8.340±2.43 5.050±1.83 21.909±7.25 10.830±4.35 5.227±0.42 5.092±0.89 4.780±1.05 6.222±1.21 7.981±2.56 7.265±3.30 9.332±1.25 9.410±7.46 18.714±7.43 7.450±2.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005730 IEA nucleolus
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373585 DDX50-001 protein_coding Homo_sapiens 0 3483
ENST00000420470 ARHGEF38-001 protein_coding Homo_sapiens 0 1406
ENST00000438163 DDX50P1-001 processed_pseudogene Homo_sapiens 0 1733
ENST00000460470 DDX50-004 processed_transcript Homo_sapiens 0 662
ENST00000463545 DDX50P2-001 processed_pseudogene Homo_sapiens 0 2433
ENST00000466265 DDX50-005 processed_transcript Homo_sapiens 0 922
ENST00000471475 DDX50-002 nonsense_mediated_decay Homo_sapiens 0 795
ENST00000483593 DDX50-003 nonsense_mediated_decay Homo_sapiens 0 874
ENST00000503155 RP11-311D14.1-001 processed_pseudogene Homo_sapiens 0 1168
ENST00000610822 DDX50-201 protein_coding Homo_sapiens 0 3373
ENST00000612682 DDX50-202 protein_coding Homo_sapiens 0 3465

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