C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420470 ARHGEF38-001 ENSG00000236699 9606 + 4:105552622-105680913 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLungOvaryENST00000420470
Transcript ID Bladder Breast Colon Lung Ovary
ENST00000420470 0.616±0.00 0.672±0.00 0.814±0.00 1.630±0.95 1.989±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006P5 CIL_0006P5_0002 CGP 4:105369077-105708093
CIL_0002LD CIL_0002LD_0002 CGP 4:105552620-105895986

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147041 Arhgef38-001 protein_coding Mus_musculus 0 2209
ENSMUST00000020270 Ddx50-201 protein_coding Mus_musculus 0 1406
ENSMUST00000189949 RP23-230A14.1-001 processed_pseudogene Mus_musculus 0 1099
ENSMUST00000054105 Arhgef38-201 protein_coding Mus_musculus 0 750
ENSMUST00000161022 Arhgef38-202 protein_coding Mus_musculus 0 717
ENSMUST00000070741 Arhgef38-002 retained_intron Mus_musculus 0 717
ENSMUST00000161932 Arhgef38-003 protein_coding Mus_musculus 0 527

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