C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adenomatosis polyposis coli 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020349 Apc2-201 ENSMUSG00000020135 10090 + 10:80301820-80318256 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartMuscleOvaryPlacentaTestisENSMUST00000020349
Transcript ID Adrenal Colon Heart Muscle Ovary Placenta Testis
ENSMUST00000020349 0.837±0.00 0.784±0.05 0.381±0.00 0.114±0.01 1.177±0.50 0.583±0.00 0.325±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZF CIL_0000ZF_0002 CGP 10:80292453-80318263
CIL_0000ZG CIL_0000ZG_0002 CGP 10:80295977-80320537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005881 IEA cytoplasmic microtubule
GO:0005884 IEA actin filament
GO:0008013 IEA beta-catenin binding
GO:0008017 IEA microtubule binding
GO:0015630 IEA microtubule cytoskeleton
GO:0016055 IEA Wnt signaling pathway
GO:0016342 IEA catenin complex
GO:0031258 IEA lamellipodium membrane
GO:0035414 IEA negative regulation of catenin import into nucleus
GO:0048471 IEA perinuclear region of cytoplasm
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233607 APC2-201 protein_coding Homo_sapiens 0 4178
ENST00000238483 APC2-006 protein_coding Homo_sapiens 0 2261
ENST00000535453 APC2-004 protein_coding Homo_sapiens 0 4178
ENST00000587149 APC2-008 protein_coding Homo_sapiens 0 431
ENST00000587869 APC2-005 protein_coding Homo_sapiens 0 544
ENST00000590469 APC2-001 protein_coding Homo_sapiens 0 2174
ENST00000590877 APC2-007 protein_coding Homo_sapiens 0 647
ENST00000593146 APC2-003 retained_intron Homo_sapiens 0 1330

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