Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	ADP-ribosylation factor 5
ENSMUST00000020717	Arf5-001	ENSMUSG00000020440	10090	+	6:28423560-28426602	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000020717	64.416±3.55	122.097±20.62	44.065±0.96	75.630±18.66	94.462±41.97	85.240±23.85	47.501±6.29	68.159±5.02	82.099±63.26	81.653±4.25	25.141±3.12	107.662±44.66	126.395±62.12	25.923±5.20

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0008LN	CIL_0008LN_0002	VISTA	6:28095025-28698247
CIL_0001OK	CIL_0001OK_0002	CGP	6:28239931-28428390
CIL_0001OJ	CIL_0001OJ_0002	CGP	6:28416091-28428390
CIL_0001OI	CIL_0001OI_0002	CGP	6:28423560-28438622

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005515	IPI	protein binding
GO:0005525	TAS	GTP binding
GO:0005737	IDA	cytoplasm
GO:0005794	IEA	Golgi apparatus
GO:0005886	IDA	plasma membrane
GO:0007264	IEA	small GTPase mediated signal transduction
GO:0015031	TAS	protein transport
GO:0016192	IEA	vesicle-mediated transport
GO:0070062	IEA	extracellular vesicular exosome

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENST00000000233	ARF5-001	protein_coding	Homo_sapiens	0	1362
ENST00000415666	ARF5-007	protein_coding	Homo_sapiens	0	778
ENST00000459680	ARF5-004	retained_intron	Homo_sapiens	0	307
ENST00000463733	ARF5-002	retained_intron	Homo_sapiens	0	813
ENST00000467281	ARF5-006	processed_transcript	Homo_sapiens	0	268
ENST00000473728	GCC1-003	processed_transcript	Homo_sapiens	2e-32	143
ENST00000478328	FSCN3-005	processed_transcript	Homo_sapiens	0	239
ENST00000489673	ARF5-003	retained_intron	Homo_sapiens	0	802

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