C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 68kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539137 SRP68-002 ENSG00000167881 9606 - 17:76039106-76072507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverMuscleOvaryENST00000539137
Transcript ID Adrenal Brain Breast Kidney Liver Muscle Ovary
ENST00000539137 9.527±0.00 3.075±1.86 7.410±0.00 3.037±1.52 8.652±0.00 9.686±8.91 1.434±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078N CIL_00078N_0001 CGP 17:76004502-76072653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005047 IPI signal recognition particle binding
GO:0005730 TAS nucleolus
GO:0005783 TAS endoplasmic reticulum
GO:0005786 IDA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0005840 TAS ribosome
GO:0006412 TAS translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0030942 IEA endoplasmic reticulum signal peptide binding
GO:0042493 IDA response to drug
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106425 Srp68-002 protein_coding Mus_musculus 0 2165
ENSMUST00000021133 Srp68-001 protein_coding Mus_musculus 0 1908
ENSMUST00000127205 Srp68-003 processed_transcript Mus_musculus 0 826
ENSMUST00000036113 Tbc1d16-001 protein_coding Mus_musculus 0.0005 53

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