C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 68kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307877 SRP68-001 ENSG00000167881 9606 - 17:76039103-76072653 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307877
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307877 28.665±0.00 7.916±0.00 2.003±0.00 10.046±7.12 9.581±3.81 14.485±10.55 7.325±6.34 10.861±7.93 6.030±0.89 16.904±11.66 23.747±21.35 21.508±11.30 28.365±3.45 16.449±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078N CIL_00078N_0001 CGP 17:76004502-76072653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005047 IPI signal recognition particle binding
GO:0005730 TAS nucleolus
GO:0005783 TAS endoplasmic reticulum
GO:0005786 IDA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0005840 TAS ribosome
GO:0006412 TAS translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0030942 IEA endoplasmic reticulum signal peptide binding
GO:0042493 IDA response to drug
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021133 Srp68-001 protein_coding Mus_musculus 0 2333
ENSMUST00000106425 Srp68-002 protein_coding Mus_musculus 0 1905
ENSMUST00000127205 Srp68-003 processed_transcript Mus_musculus 0 1251
ENSMUST00000036113 Tbc1d16-001 protein_coding Mus_musculus 0.0005 53

Loading