C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 0610010K14 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021181 0610010K14Rik-008 ENSMUSG00000020831 10090 - 11:70235206-70237914 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryPlacentaENSMUST00000021181
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary Placenta
ENSMUST00000021181 25.137±0.00 11.162±1.80 29.109±8.64 22.125±4.37 15.660±5.21 22.583±7.02 14.478±1.50 17.889±2.44 26.550±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0003 CGP 11:70235206-70239830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0008150 ND biological_process
GO:0016568 IEA chromatin modification
GO:0016589 ISS NURF complex
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000439424 C17orf49-001 protein_coding Homo_sapiens 0 616
ENST00000546495 C17orf49-006 protein_coding Homo_sapiens 0 645
ENST00000546760 C17orf49-003 protein_coding Homo_sapiens 0 863
ENST00000547302 RNASEK-C17orf49-004 protein_coding Homo_sapiens 0 512
ENST00000547709 C17orf49-009 processed_transcript Homo_sapiens 0 435
ENST00000547747 C17orf49-007 nonsense_mediated_decay Homo_sapiens 4e-18 95
ENST00000547863 RNASEK-C17orf49-002 retained_intron Homo_sapiens 0 645
ENST00000549775 RNASEK-C17orf49-001 retained_intron Homo_sapiens 0 514
ENST00000549857 C17orf49-002 retained_intron Homo_sapiens 0 254
ENST00000550038 C17orf49-008 processed_transcript Homo_sapiens 0 315
ENST00000552402 C17orf49-004 protein_coding Homo_sapiens 0 233
ENST00000552775 C17orf49-005 protein_coding Homo_sapiens 0 514

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