C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor II A, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021345 Gtf2a1-001 ENSMUSG00000020962 10090 - 12:91555916-91590009 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021345 7.396±3.41 7.039±0.75 3.262±0.26 5.441±2.95 6.000±2.30 5.130±1.49 3.845±0.67 8.092±0.54 4.854±1.51 11.118±0.42 0.567±0.24 13.128±7.12 3.693±1.78 6.449±2.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087I CIL_00087I_0002 VISTA 12:91377577-91981083
CIL_0004TT CIL_0004TT_0002 CGP 12:91400994-91590487
CIL_0004TS CIL_0004TS_0002 CGP 12:91555916-91788387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005672 IDA transcription factor TFIIA complex
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 IEA transcription initiation from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298173 GTF2A1-004 nonsense_mediated_decay Homo_sapiens 0 1332
ENST00000434192 GTF2A1-003 protein_coding Homo_sapiens 0 1458
ENST00000553612 GTF2A1-001 protein_coding Homo_sapiens 0 2612
ENST00000556268 GTF2A1-002 retained_intron Homo_sapiens 0 571

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