Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_0004TS_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000165417-ENSG00000140022	CGP	9606	14:81175452-81436465
Gene	Transcript	Position	Biotype
ENSG00000140022 (STON2) stonin 2	ENST00000267540 (STON2-001)	81270507-81398583	protein_coding
	ENST00000553821 (STON2-008)	81268048-81276933	protein_coding
	ENST00000554710 (STON2-006)	81398373-81436207	protein_coding
	ENST00000555226 (STON2-003)	81394950-81418253	retained_intron
	ENST00000555284 (STON2-004)	81270429-81278818	retained_intron
	ENST00000555447 (STON2-002)	81260656-81427404	protein_coding
	ENST00000556280 (STON2-007)	81278476-81323683	processed_transcript
	ENST00000557055 (STON2-005)	81396118-81436465	protein_coding
	ENST00000614646 (STON2-201)	81261782-81398583	protein_coding
ENSG00000165417 (GTF2A1) general transcription factor IIA, 1, 19/37kDa	ENST00000298173 (GTF2A1-004)	81180178-81220952	nonsense_mediated_decay
	ENST00000434192 (GTF2A1-003)	81180209-81221231	protein_coding
	ENST00000553612 (GTF2A1-001)	81175452-81220922	protein_coding
	ENST00000556268 (GTF2A1-002)	81197227-81221377	retained_intron
ENSG00000205579 (DYNLL1P1) dynein, light chain, LC8-type 1 pseudogene 1	ENST00000595442 (DYNLL1P1-001)	81246295-81246563	processed_pseudogene
ENSG00000221303 (SNORA79) small nucleolar RNA, H/ACA box 79	ENST00000408376 (SNORA79-201)	81202695-81202834	snoRNA
ENSG00000242163 (RP11-299L17.1)	ENST00000469473 (RP11-299L17.1-001)	81332961-81333361	processed_pseudogene
ENSG00000258605 (DYNLL1P2) dynein, light chain, LC8-type 1 pseudogene 2	ENST00000554807 (DYNLL1P2-001)	81412970-81413239	processed_pseudogene
ENSG00000270343 (UNGP3) uracil-DNA glycosylase pseudogene 3	ENST00000603734 (UNGP3-001)	81259565-81260239	processed_pseudogene
ENSG00000273941 (AL136040.1)	ENST00000617646 (AL136040.1-201)	81195040-81195148	miRNA

CIL_0004TS_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000020962-ENSMUSG00000020961	CGP	10090	12:91555916-91788387
Gene	Transcript	Position	Biotype
ENSMUSG00000020961 (Ston2) stonin 2	ENSMUST00000052969 (Ston2-001)	91638542-91786436	protein_coding
	ENSMUST00000111609 (Ston2-005)	91703413-91713974	processed_transcript
	ENSMUST00000164713 (Ston2-003)	91641543-91743855	protein_coding
	ENSMUST00000166008 (Ston2-004)	91785801-91788387	processed_transcript
	ENSMUST00000166967 (Ston2-007)	91743618-91746084	protein_coding
	ENSMUST00000170077 (Ston2-006)	91714082-91779137	protein_coding
	ENSMUST00000170984 (Ston2-002)	91735054-91771170	processed_transcript
ENSMUSG00000020962 (Gtf2a1) general transcription factor II A, 1	ENSMUST00000021345 (Gtf2a1-001)	91555916-91590009	protein_coding
	ENSMUST00000063314 (Gtf2a1-002)	91558688-91590487	protein_coding
	ENSMUST00000163693 (Gtf2a1-003)	91586625-91589639	retained_intron
ENSMUSG00000080365 (Gm25776) predicted gene, 25776	ENSMUST00000116715 (Gm25776-201)	91573430-91573572	snoRNA
ENSMUSG00000086689 (Gm16876) predicted gene, 16876	ENSMUST00000151945 (Gm16876-001)	91684665-91693590	antisense
ENSMUSG00000090722 (Gm8378) predicted gene 8378	ENSMUST00000165070 (Gm8378-003)	91674812-91686068	processed_transcript
	ENSMUST00000167777 (Gm8378-002)	91684466-91686113	processed_transcript
	ENSMUST00000172047 (Gm8378-001)	91682578-91686113	processed_transcript

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000140022

ENST00000267540

N/A

0.652±0.00

N/A

0.581±0.00

N/A

ENST00000553821

N/A

0.887±0.00

N/A

1.389±0.00

N/A

3.933±0.00

N/A

1.424±0.00

ENST00000554710

N/A

ENST00000555226

N/A

ENST00000555284

N/A

1.226±0.00

N/A

ENST00000555447

0.728±0.00

N/A

3.023±0.00

0.727±0.00

0.221±0.00

0.109±0.00

1.561±0.00

N/A

0.635±0.21

0.101±0.00

0.315±0.00

ENST00000556280

N/A

ENST00000557055

N/A

2.481±0.00

N/A

ENST00000614646

N/A

0.161±0.00

N/A

ENSG00000165417

ENST00000298173

N/A

1.027±0.00

N/A

2.188±0.00

N/A

4.100±0.00

ENST00000434192

N/A

3.084±0.00

N/A

2.046±0.00

7.898±0.00

ENST00000553612

8.794±0.00

2.495±0.00

2.270±0.00

6.107±1.13

3.853±0.45

2.380±0.06

1.969±0.48

3.010±0.22

3.573±1.18

3.121±0.83

7.264±0.00

3.042±1.59

2.908±0.94

7.428±0.66

ENST00000556268

N/A

ENSG00000205579

ENST00000595442

N/A

0.203±0.00

N/A

0.068±0.00

N/A

0.069±0.00

N/A

0.059±0.00

N/A

0.706±0.00

ENSG00000221303

ENST00000408376

N/A

7.579±0.00

7.875±0.00

30.381±0.00

24.858±0.00

N/A

27.381±0.00

N/A

ENSG00000242163

ENST00000469473

0.030±0.00

0.093±0.00

0.669±0.00

0.495±0.47

0.060±0.00

0.057±0.00

0.055±0.00

0.061±0.00

0.378±0.00

N/A

0.377±0.00

0.305±0.27

0.471±0.36

0.259±0.18

ENSG00000258605

ENST00000554807

N/A

0.547±0.00

N/A

ENSG00000270343

ENST00000603734

0.169±0.00

0.066±0.00

0.404±0.00

0.208±0.00

0.200±0.00

0.143±0.00

0.020±0.00

0.241±0.00

0.099±0.00

0.082±0.00

0.172±0.00

0.222±0.16

0.045±0.00

0.193±0.01

ENSG00000273941

ENST00000617646

0.257±0.00

N/A

34.764±0.00

N/A

0.541±0.00

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000020961

ENSMUST00000052969

0.686±0.00

0.693±0.20

N/A

1.260±0.46

N/A

1.821±0.00

N/A

3.220±0.97

N/A

2.114±0.00

ENSMUST00000111609

N/A

ENSMUST00000164713

1.024±0.34

N/A

0.653±0.00

1.107±0.00

0.587±0.00

2.468±0.42

1.679±1.27

0.970±0.20

N/A

2.445±0.82

N/A

1.421±0.78

ENSMUST00000166008

N/A

ENSMUST00000166967

N/A

4.138±0.00

N/A

10.413±0.00

N/A

ENSMUST00000170077

N/A

1.588±0.28

N/A

3.364±0.54

5.418±0.93

N/A

9.813±2.36

1.949±0.59

6.308±1.12

N/A

9.714±1.36

N/A

ENSMUST00000170984

N/A

ENSMUSG00000020962

ENSMUST00000021345

7.396±3.41

7.039±0.75

3.262±0.26

5.441±2.95

6.000±2.30

5.130±1.49

3.845±0.67

8.092±0.54

4.854±1.51

11.118±0.42

0.567±0.24

13.128±7.12

3.693±1.78

6.449±2.59

ENSMUST00000063314

N/A

6.884±1.81

N/A

4.015±0.52

3.096±0.54

N/A

1.856±0.33

N/A

8.894±4.20

3.885±0.00

6.066±3.32

ENSMUST00000163693

N/A

102.100±0.00

N/A

ENSMUSG00000080365

ENSMUST00000116715

N/A

3.843±1.36

N/A

4.162±0.34

9.219±3.35

9.784±3.21

N/A

ENSMUSG00000086689

ENSMUST00000151945

0.078±0.00

N/A

0.056±0.00

0.009±0.00

0.098±0.00

N/A

0.039±0.00

0.262±0.16

ENSMUSG00000090722

ENSMUST00000165070

N/A

0.112±0.00

0.140±0.00

N/A

0.108±0.01

N/A

0.272±0.05

0.183±0.08

0.854±0.54

ENSMUST00000167777

0.086±0.02

N/A

0.777±0.00

0.053±0.00

0.272±0.00

0.141±0.03

N/A

0.072±0.03

N/A

0.094±0.02

N/A

0.291±0.19

0.101±0.05

0.043±0.00

ENSMUST00000172047

0.084±0.04

N/A

0.765±0.00

0.392±0.00

0.229±0.07

0.293±0.09

0.067±0.00

0.161±0.11

0.094±0.05

0.168±0.08

N/A

0.276±0.26

0.159±0.06

0.270±0.16

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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