C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004TS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165417-ENSG00000140022 CGP 9606 14:81175452-81436465
GeneTranscriptPositionBiotype
ENSG00000140022 (STON2)
stonin 2 		ENST00000267540 (STON2-001) 81270507-81398583 protein_coding
ENST00000553821 (STON2-008) 81268048-81276933 protein_coding
ENST00000554710 (STON2-006) 81398373-81436207 protein_coding
ENST00000555226 (STON2-003) 81394950-81418253 retained_intron
ENST00000555284 (STON2-004) 81270429-81278818 retained_intron
ENST00000555447 (STON2-002) 81260656-81427404 protein_coding
ENST00000556280 (STON2-007) 81278476-81323683 processed_transcript
ENST00000557055 (STON2-005) 81396118-81436465 protein_coding
ENST00000614646 (STON2-201) 81261782-81398583 protein_coding
ENSG00000165417 (GTF2A1)
general transcription factor IIA, 1, 19/37kDa 		ENST00000298173 (GTF2A1-004) 81180178-81220952 nonsense_mediated_decay
ENST00000434192 (GTF2A1-003) 81180209-81221231 protein_coding
ENST00000553612 (GTF2A1-001) 81175452-81220922 protein_coding
ENST00000556268 (GTF2A1-002) 81197227-81221377 retained_intron
ENSG00000205579 (DYNLL1P1)
dynein, light chain, LC8-type 1 pseudogene 1 		ENST00000595442 (DYNLL1P1-001) 81246295-81246563 processed_pseudogene
ENSG00000221303 (SNORA79)
small nucleolar RNA, H/ACA box 79 		ENST00000408376 (SNORA79-201) 81202695-81202834 snoRNA
ENSG00000242163 (RP11-299L17.1)
 ENST00000469473 (RP11-299L17.1-001) 81332961-81333361 processed_pseudogene
ENSG00000258605 (DYNLL1P2)
dynein, light chain, LC8-type 1 pseudogene 2 		ENST00000554807 (DYNLL1P2-001) 81412970-81413239 processed_pseudogene
ENSG00000270343 (UNGP3)
uracil-DNA glycosylase pseudogene 3 		ENST00000603734 (UNGP3-001) 81259565-81260239 processed_pseudogene
ENSG00000273941 (AL136040.1)
 ENST00000617646 (AL136040.1-201) 81195040-81195148 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004TS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020962-ENSMUSG00000020961 CGP 10090 12:91555916-91788387
GeneTranscriptPositionBiotype
ENSMUSG00000020961 (Ston2)
stonin 2 		ENSMUST00000052969 (Ston2-001) 91638542-91786436 protein_coding
ENSMUST00000111609 (Ston2-005) 91703413-91713974 processed_transcript
ENSMUST00000164713 (Ston2-003) 91641543-91743855 protein_coding
ENSMUST00000166008 (Ston2-004) 91785801-91788387 processed_transcript
ENSMUST00000166967 (Ston2-007) 91743618-91746084 protein_coding
ENSMUST00000170077 (Ston2-006) 91714082-91779137 protein_coding
ENSMUST00000170984 (Ston2-002) 91735054-91771170 processed_transcript
ENSMUSG00000020962 (Gtf2a1)
general transcription factor II A, 1 		ENSMUST00000021345 (Gtf2a1-001) 91555916-91590009 protein_coding
ENSMUST00000063314 (Gtf2a1-002) 91558688-91590487 protein_coding
ENSMUST00000163693 (Gtf2a1-003) 91586625-91589639 retained_intron
ENSMUSG00000080365 (Gm25776)
predicted gene, 25776 		ENSMUST00000116715 (Gm25776-201) 91573430-91573572 snoRNA
ENSMUSG00000086689 (Gm16876)
predicted gene, 16876 		ENSMUST00000151945 (Gm16876-001) 91684665-91693590 antisense
ENSMUSG00000090722 (Gm8378)
predicted gene 8378 		ENSMUST00000165070 (Gm8378-003) 91674812-91686068 processed_transcript
ENSMUST00000167777 (Gm8378-002) 91684466-91686113 processed_transcript
ENSMUST00000172047 (Gm8378-001) 91682578-91686113 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TS_0001ENSG00000140022ENST00000267540ENST00000553821ENST00000554710ENST00000555226ENST00000555284ENST00000555447ENST00000556280ENST00000557055ENST00000614646ENSG00000165417ENST00000298173ENST00000434192ENST00000553612ENST00000556268ENSG00000205579ENST00000595442ENSG00000221303ENST00000408376ENSG00000242163ENST00000469473ENSG00000258605ENST00000554807ENSG00000270343ENST00000603734ENSG00000273941ENST00000617646CIL_0004TS_0002ENSMUSG00000020961ENSMUST00000052969ENSMUST00000111609ENSMUST00000164713ENSMUST00000166008ENSMUST00000166967ENSMUST00000170077ENSMUST00000170984ENSMUSG00000020962ENSMUST00000021345ENSMUST00000063314ENSMUST00000163693ENSMUSG00000080365ENSMUST00000116715ENSMUSG00000086689ENSMUST00000151945ENSMUSG00000090722ENSMUST00000165070ENSMUST00000167777ENSMUST00000172047
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TS_0001ENSG00000140022ENST00000267540ENST00000553821ENST00000555284ENST00000555447ENST00000557055ENST00000614646ENSG00000165417ENST00000298173ENST00000434192ENST00000553612ENSG00000205579ENST00000595442ENSG00000221303ENST00000408376ENSG00000242163ENST00000469473ENSG00000258605ENST00000554807ENSG00000270343ENST00000603734ENSG00000273941ENST00000617646CIL_0004TS_0002ENSMUSG00000020961ENSMUST00000052969ENSMUST00000164713ENSMUST00000166967ENSMUST00000170077ENSMUSG00000020962ENSMUST00000021345ENSMUST00000063314ENSMUST00000163693ENSMUSG00000080365ENSMUST00000116715ENSMUSG00000086689ENSMUST00000151945ENSMUSG00000090722ENSMUST00000165070ENSMUST00000167777ENSMUST00000172047
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140022 ENST00000267540 N/A N/A N/A N/A 0.652±0.00 N/A N/A N/A N/A N/A N/A 0.581±0.00 N/A N/A
ENST00000553821 N/A N/A N/A N/A N/A 0.887±0.00 N/A 1.389±0.00 N/A 3.933±0.00 N/A N/A N/A 1.424±0.00
ENST00000554710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555284 N/A N/A N/A N/A N/A N/A N/A N/A 1.226±0.00 N/A N/A N/A N/A N/A
ENST00000555447 0.728±0.00 N/A N/A 3.023±0.00 0.727±0.00 0.221±0.00 0.109±0.00 1.561±0.00 N/A N/A N/A 0.635±0.21 0.101±0.00 0.315±0.00
ENST00000556280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557055 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.481±0.00 N/A N/A N/A N/A
ENST00000614646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A
ENSG00000165417 ENST00000298173 N/A N/A 1.027±0.00 N/A N/A N/A N/A N/A 2.188±0.00 N/A N/A N/A N/A 4.100±0.00
ENST00000434192 N/A N/A N/A N/A 3.084±0.00 N/A N/A N/A N/A N/A N/A N/A 2.046±0.00 7.898±0.00
ENST00000553612 8.794±0.00 2.495±0.00 2.270±0.00 6.107±1.13 3.853±0.45 2.380±0.06 1.969±0.48 3.010±0.22 3.573±1.18 3.121±0.83 7.264±0.00 3.042±1.59 2.908±0.94 7.428±0.66
ENST00000556268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000205579 ENST00000595442 N/A 0.203±0.00 N/A N/A 0.068±0.00 N/A N/A 0.069±0.00 N/A N/A 0.059±0.00 N/A N/A 0.706±0.00
ENSG00000221303 ENST00000408376 N/A N/A N/A 7.579±0.00 7.875±0.00 30.381±0.00 24.858±0.00 N/A 27.381±0.00 N/A N/A N/A N/A N/A
ENSG00000242163 ENST00000469473 0.030±0.00 0.093±0.00 0.669±0.00 0.495±0.47 0.060±0.00 0.057±0.00 0.055±0.00 0.061±0.00 0.378±0.00 N/A 0.377±0.00 0.305±0.27 0.471±0.36 0.259±0.18
ENSG00000258605 ENST00000554807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.547±0.00 N/A N/A
ENSG00000270343 ENST00000603734 0.169±0.00 0.066±0.00 0.404±0.00 0.208±0.00 0.200±0.00 0.143±0.00 0.020±0.00 0.241±0.00 0.099±0.00 0.082±0.00 0.172±0.00 0.222±0.16 0.045±0.00 0.193±0.01
ENSG00000273941 ENST00000617646 0.257±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.764±0.00 N/A 0.541±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020961 ENSMUST00000052969 0.686±0.00 0.693±0.20 N/A N/A 1.260±0.46 N/A N/A N/A N/A 1.821±0.00 N/A 3.220±0.97 N/A 2.114±0.00
ENSMUST00000111609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164713 1.024±0.34 N/A N/A N/A 0.653±0.00 1.107±0.00 0.587±0.00 2.468±0.42 1.679±1.27 0.970±0.20 N/A 2.445±0.82 N/A 1.421±0.78
ENSMUST00000166008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166967 N/A 4.138±0.00 N/A N/A 10.413±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170077 N/A 1.588±0.28 N/A N/A 3.364±0.54 5.418±0.93 N/A 9.813±2.36 1.949±0.59 6.308±1.12 N/A 9.714±1.36 N/A N/A
ENSMUST00000170984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020962 ENSMUST00000021345 7.396±3.41 7.039±0.75 3.262±0.26 5.441±2.95 6.000±2.30 5.130±1.49 3.845±0.67 8.092±0.54 4.854±1.51 11.118±0.42 0.567±0.24 13.128±7.12 3.693±1.78 6.449±2.59
ENSMUST00000063314 N/A 6.884±1.81 N/A N/A 4.015±0.52 3.096±0.54 N/A N/A 1.856±0.33 N/A N/A 8.894±4.20 3.885±0.00 6.066±3.32
ENSMUST00000163693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 102.100±0.00 N/A
ENSMUSG00000080365 ENSMUST00000116715 N/A N/A N/A N/A N/A N/A N/A N/A 3.843±1.36 N/A 4.162±0.34 9.219±3.35 9.784±3.21 N/A
ENSMUSG00000086689 ENSMUST00000151945 0.078±0.00 N/A N/A N/A N/A N/A N/A 0.056±0.00 0.009±0.00 0.098±0.00 N/A N/A 0.039±0.00 0.262±0.16
ENSMUSG00000090722 ENSMUST00000165070 N/A N/A N/A N/A 0.112±0.00 0.140±0.00 N/A N/A 0.108±0.01 N/A N/A 0.272±0.05 0.183±0.08 0.854±0.54
ENSMUST00000167777 0.086±0.02 N/A 0.777±0.00 0.053±0.00 0.272±0.00 0.141±0.03 N/A 0.072±0.03 N/A 0.094±0.02 N/A 0.291±0.19 0.101±0.05 0.043±0.00
ENSMUST00000172047 0.084±0.04 N/A 0.765±0.00 0.392±0.00 0.229±0.07 0.293±0.09 0.067±0.00 0.161±0.11 0.094±0.05 0.168±0.08 N/A 0.276±0.26 0.159±0.06 0.270±0.16

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