C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 54A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021407 Srp54a-201 ENSMUSG00000073079 10090 + 12:55089202-55112891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverENSMUST00000021407
Transcript ID Bladder Brain Liver
ENSMUST00000021407 34.609±0.00 12.400±12.24 39.266±9.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045L CIL_00045L_0002 CGP 12:55089202-55142078

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005786 IEA signal recognition particle, endoplasmic reticulum targeting
GO:0006184 IEA GTP catabolic process
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000018678 srp54-201 protein_coding Danio_rerio 0 1149
ENSDART00000133424 srp54-001 protein_coding Danio_rerio 0 1149
ENST00000216774 SRP54-201 protein_coding Homo_sapiens 0 2145
ENST00000546080 SRP54-202 protein_coding Homo_sapiens 0 1881
ENST00000553544 SRP54-009 retained_intron Homo_sapiens 2e-32 143
ENST00000554803 SRP54-005 protein_coding Homo_sapiens 0 198
ENST00000555317 SRP54-008 retained_intron Homo_sapiens 0 268
ENST00000555535 SRP54-007 processed_transcript Homo_sapiens 0 399
ENST00000555557 SRP54-002 protein_coding Homo_sapiens 0 1881
ENST00000555746 SRP54-006 protein_coding Homo_sapiens 0 344
ENST00000556380 SRP54-010 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000556992 SRP54-013 retained_intron Homo_sapiens 0 243
ENST00000556994 SRP54-001 protein_coding Homo_sapiens 0 2145

Loading