C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 54kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216774 SRP54-201 ENSG00000100883 9606 + 14:34982898-35029565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216774
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216774 4.793±0.00 3.076±0.00 6.613±0.86 3.654±0.09 4.907±0.64 2.434±0.45 9.055±2.83 3.874±0.57 3.987±2.29 1.985±0.75 15.164±5.04 9.441±4.00 17.437±6.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045L CIL_00045L_0001 CGP 14:34981957-35113130

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA:IDA GTPase activity
GO:0005525 IEA:IDA GTP binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005786 IDA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006184 IEA GTP catabolic process
GO:0006412 TAS translation
GO:0006614 IEA:IC SRP-dependent cotranslational protein targeting to membrane
GO:0006616 ISS SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0006617 ISS SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0008144 IDA drug binding
GO:0008312 IEA:IDA 7S RNA binding
GO:0010467 TAS gene expression
GO:0019003 IDA GDP binding
GO:0030942 IDA endoplasmic reticulum signal peptide binding
GO:0042493 IDA response to drug
GO:0043021 IDA ribonucleoprotein complex binding
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045047 IMP protein targeting to ER
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110708 Srp54b-201 protein_coding Mus_musculus 0 2425
ENSMUST00000164243 Srp54b-202 protein_coding Mus_musculus 0 2185
ENSMUST00000021407 Srp54a-201 protein_coding Mus_musculus 0 2145
ENSDART00000018678 srp54-201 protein_coding Danio_rerio 0 1122
ENSDART00000133424 srp54-001 protein_coding Danio_rerio 0 1122

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