C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 54kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555557 SRP54-002 ENSG00000100883 9606 + 14:34983025-35029454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000555557
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000555557 8.531±0.00 8.768±0.00 8.060±5.36 7.542±0.00 4.099±0.00 2.947±2.28 10.035±0.00 4.544±2.75 4.483±0.00 5.369±0.00 12.591±12.96 4.570±0.70 24.698±8.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045L CIL_00045L_0001 CGP 14:34981957-35113130

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110708 Srp54b-201 protein_coding Mus_musculus 0 1890
ENSMUST00000021407 Srp54a-201 protein_coding Mus_musculus 0 1881
ENSMUST00000164243 Srp54b-202 protein_coding Mus_musculus 0 1857
ENSDART00000018678 srp54-201 protein_coding Danio_rerio 0 1005
ENSDART00000133424 srp54-001 protein_coding Danio_rerio 0 1005

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