C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNW domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021428 Snw1-201 ENSMUSG00000021039 10090 - 12:87449936-87472299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021428 11.282±1.56 4.719±0.78 31.703±0.79 33.242±14.35 9.989±2.07 6.972±1.30 8.023±0.32 11.046±0.86 14.141±10.49 9.637±0.35 21.587±2.18 22.641±26.65 44.563±22.95 25.828±24.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TV CIL_0004TV_0002 CGP 12:87425840-87452206
CIL_0004U2 CIL_0004U2_0002 CGP 12:87443896-87472299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IEA chromatin
GO:0003713 IEA transcription coactivator activity
GO:0003714 IEA transcription corepressor activity
GO:0005112 IEA Notch binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008024 IEA positive transcription elongation factor complex b
GO:0016363 IEA nuclear matrix
GO:0030511 IEA positive regulation of transforming growth factor beta receptor signaling pathway
GO:0035257 IEA nuclear hormone receptor binding
GO:0042771 IEA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042809 IEA vitamin D receptor binding
GO:0042974 IEA retinoic acid receptor binding
GO:0043923 IEA positive regulation by host of viral transcription
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046332 IEA SMAD binding
GO:0048026 IEA positive regulation of mRNA splicing, via spliceosome
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0048385 IEA regulation of retinoic acid receptor signaling pathway
GO:0051571 IEA positive regulation of histone H3-K4 methylation
GO:0070562 IEA regulation of vitamin D receptor signaling pathway
GO:0070564 IEA positive regulation of vitamin D receptor signaling pathway
GO:0071013 IEA catalytic step 2 spliceosome
GO:0071146 IEA SMAD3-SMAD4 protein complex
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261531 SNW1-001 protein_coding Homo_sapiens 0 2318
ENST00000444644 RP4-641G12.4-001 processed_pseudogene Homo_sapiens 0 1797
ENST00000553565 SNW1-008 retained_intron Homo_sapiens 0 582
ENST00000554324 SNW1-007 protein_coding Homo_sapiens 0 628
ENST00000554775 SNW1-004 protein_coding Homo_sapiens 0 1700
ENST00000555761 SNW1-003 protein_coding Homo_sapiens 0 2028
ENST00000556428 SNW1-002 nonsense_mediated_decay Homo_sapiens 0 2228
ENST00000557623 SLIRP-003 protein_coding Homo_sapiens 9.99967e-42 174
ENST00000557663 SNW1-006 retained_intron Homo_sapiens 0 760
ENST00000616954 AC068831.17-001 unprocessed_pseudogene Homo_sapiens 0 337

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