C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, G
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022264 Ptprg-001 ENSMUSG00000021745 10090 + 14:11553532-12242041 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022264
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022264 4.148±0.54 8.968±2.71 2.973±0.40 6.075±2.97 1.866±0.61 1.782±0.60 2.553±0.04 3.043±0.92 1.175±0.80 7.921±0.34 1.499±0.55 5.731±2.30 1.293±0.20 0.432±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QX CIL_0008QX_0002 VISTA 14:11475621-12079078
CIL_00034G CIL_00034G_0002 CGP 14:11553532-12303231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005615 IEA extracellular space
GO:0007420 IEA brain development
GO:0010633 IEA negative regulation of epithelial cell migration
GO:0010977 IEA negative regulation of neuron projection development
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0042802 IEA identical protein binding
GO:0070062 IEA extracellular vesicular exosome
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000092552 ptprga-201 protein_coding Danio_rerio 0 1434
ENSDART00000017309 ca16b-001 protein_coding Danio_rerio 0 869
ENSDART00000154392 ca16b-003 protein_coding Danio_rerio 0 257
ENST00000295874 PTPRG-002 protein_coding Homo_sapiens 0 2926
ENST00000468576 PTPRG-008 retained_intron Homo_sapiens 0 431
ENST00000474889 PTPRG-001 protein_coding Homo_sapiens 0 6527
ENST00000475012 PTPRG-005 processed_transcript Homo_sapiens 0 3018
ENST00000475527 PTPRG-003 processed_transcript Homo_sapiens 0 656
ENST00000485215 PTPRG-007 processed_transcript Homo_sapiens 0 728
ENST00000495879 PTPRG-006 processed_transcript Homo_sapiens 0 1033
ENST00000615556 PTPRG-201 protein_coding Homo_sapiens 0 5958
ENST00000618938 PTPRG-202 protein_coding Homo_sapiens 0 3458

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