C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, G
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000474889 PTPRG-001 ENSG00000144724 9606 + 3:61561911-62297613 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000474889
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000474889 2.775±0.00 3.196±1.38 4.265±0.00 5.882±0.00 0.782±0.09 5.413±5.01 1.039±0.25 1.511±0.00 0.613±0.32 1.612±0.92 4.519±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QX CIL_0008QX_0001 VISTA 3:61508217-62112191
CIL_00034G CIL_00034G_0001 CGP 3:61561569-62336213

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IDA:IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IPI:IEA protein binding
GO:0005615 IEA extracellular space
GO:0005887 TAS integral component of plasma membrane
GO:0006470 IEA protein dephosphorylation
GO:0007169 TAS transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007420 IEA brain development
GO:0010633 IMP negative regulation of epithelial cell migration
GO:0010977 IEA negative regulation of neuron projection development
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0042802 IPI identical protein binding
GO:0070062 IDA extracellular vesicular exosome
GO:1901998 IEA toxin transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022264 Ptprg-001 protein_coding Mus_musculus 0 6527
ENSMUST00000142917 Ptprg-002 nonsense_mediated_decay Mus_musculus 0 4937
ENSMUST00000119888 Ptprg-004 protein_coding Mus_musculus 0 3310
ENSDART00000092552 ptprga-201 protein_coding Danio_rerio 0 1376
ENSMUST00000148113 Ptprg-003 retained_intron Mus_musculus 0 963
ENSDART00000017309 ca16b-001 protein_coding Danio_rerio 0 819
ENSMUST00000155727 Ptprg-006 protein_coding Mus_musculus 0 470
ENSMUST00000134290 Ptprg-005 processed_transcript Mus_musculus 0 390
ENSDART00000154392 ca16b-003 protein_coding Danio_rerio 0 291

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