C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022871 Sdc2-001 ENSMUSG00000022261 10090 + 15:32920723-33034730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022871
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022871 19.397±2.63 18.123±2.88 27.164±1.31 4.321±0.19 12.821±1.57 15.669±0.96 8.662±0.68 14.171±1.50 26.386±16.99 19.470±1.01 1.992±0.30 21.245±5.80 2.871±2.38 1.295±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SV CIL_0006SV_0002 CGP 15:32920723-33594552

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0005515 IPI protein binding
GO:0005796 TAS Golgi lumen
GO:0008092 IEA cytoskeletal protein binding
GO:0016021 IEA integral component of membrane
GO:0030165 IEA PDZ domain binding
GO:0031000 IEA response to caffeine
GO:0042060 IEA wound healing
GO:0043025 IEA neuronal cell body
GO:0045202 IEA synapse
GO:0048813 IEA dendrite morphogenesis
GO:0048814 IMP regulation of dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302190 SDC2-001 protein_coding Homo_sapiens 0 1958
ENST00000518385 SDC2-002 protein_coding Homo_sapiens 0 994
ENST00000519914 SDC2-003 protein_coding Homo_sapiens 0 1055
ENST00000520233 SDC2-008 processed_transcript Homo_sapiens 3e-20 102

Loading