C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520233 SDC2-008 ENSG00000169439 9606 + 8:96493813-96537343 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000520233
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000520233 10.214±0.00 11.724±0.00 26.024±0.00 11.534±0.00 9.309±0.00 105.060±0.00 30.635±0.00 6.427±0.00 16.379±0.90 107.311±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SV CIL_0006SV_0001 CGP 8:96493351-97149654

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022871 Sdc2-001 protein_coding Mus_musculus 3e-20 102
ENSMUST00000147013 Sdc2-002 processed_transcript Mus_musculus 1e-19 100

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