C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302190 SDC2-001 ENSG00000169439 9606 + 8:96493351-96611780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302190
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302190 10.876±0.00 7.025±0.00 4.514±0.00 3.045±1.86 12.848±5.05 13.657±9.42 4.105±1.87 19.813±9.40 10.741±6.11 11.832±8.47 1.589±0.48 16.057±10.31 17.064±2.11 9.761±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SV CIL_0006SV_0001 CGP 8:96493351-97149654

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001666 IEA response to hypoxia
GO:0005515 IPI protein binding
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007603 TAS phototransduction, visible light
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030165 IPI PDZ domain binding
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0031000 IEA response to caffeine
GO:0042060 IEA wound healing
GO:0043025 IEA neuronal cell body
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0045202 IEA synapse
GO:0048813 IEA dendrite morphogenesis
GO:0048814 ISS regulation of dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022871 Sdc2-001 protein_coding Mus_musculus 0 1958
ENSMUST00000147013 Sdc2-002 processed_transcript Mus_musculus 9e-19 100

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