C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: grainyhead-like 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022895 Grhl2-001 ENSMUSG00000022286 10090 + 15:37233036-37363569 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000022895
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000022895 1.305±0.83 0.029±0.00 5.639±0.15 0.110±0.01 1.553±0.68 5.013±2.29 0.047±0.00 1.266±0.33 0.026±0.02 3.440±0.53 1.974±1.12 4.451±2.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088H CIL_00088H_0002 VISTA 15:36752172-37355037
CIL_000532 CIL_000532_0003 CGP 15:36997031-37363569
CIL_0004T4 CIL_0004T4_0003 CGP 15:37233036-37792570

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001843 IMP neural tube closure
GO:0003208 IMP cardiac ventricle morphogenesis
GO:0003677 ISA:IDA DNA binding
GO:0003700 ISA:IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISA:IDA regulation of transcription, DNA-templated
GO:0007420 IMP brain development
GO:0010468 IMP regulation of gene expression
GO:0021915 IMP neural tube development
GO:0030323 IMP respiratory tube development
GO:0035264 IMP multicellular organism growth
GO:0042733 IMP embryonic digit morphogenesis
GO:0043010 IMP camera-type eye development
GO:0048568 IMP embryonic organ development
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0060324 IMP face development
GO:0060463 IMP lung lobe morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088994 grhl2b-201 protein_coding Danio_rerio 0 514
ENSDART00000149221 grhl2b-001 protein_coding Danio_rerio 0 514
ENSDART00000148528 grhl2a-002 protein_coding Danio_rerio 0 375
ENST00000251808 GRHL2-001 protein_coding Homo_sapiens 0 2916
ENST00000324907 GRHL1-001 protein_coding Homo_sapiens 0 292
ENST00000395927 GRHL2-002 protein_coding Homo_sapiens 0 2250
ENST00000405379 GRHL1-201 protein_coding Homo_sapiens 0 292
ENST00000439493 GRHL1-004 nonsense_mediated_decay Homo_sapiens 3e-35 152
ENST00000464418 GRHL1-003 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000472106 GRHL2-003 retained_intron Homo_sapiens 0 821
ENST00000472167 GRHL1-006 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000497403 GRHL1-002 retained_intron Homo_sapiens 3e-34 152
ENST00000521085 GRHL2-005 protein_coding Homo_sapiens 0 209

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