C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoribosylglycinamide formyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023684 Gart-001 ENSMUSG00000022962 10090 - 16:91621186-91646952 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023684 7.558±2.12 2.680±0.86 5.810±1.38 7.021±0.00 4.180±1.34 5.511±1.66 3.600±0.47 4.156±0.97 10.997±12.37 5.010±0.57 4.142±0.85 7.707±2.77 7.932±1.98 3.946±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EH CIL_0007EH_0002 CGP 16:91614257-91646952
CIL_000466 CIL_000466_0002 CGP 16:91621186-91679221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003360 IEA brainstem development
GO:0004637 IEA phosphoribosylamine-glycine ligase activity
GO:0004641 IEA phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 IEA phosphoribosylglycinamide formyltransferase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006189 IEA 'de novo' IMP biosynthetic process
GO:0006544 IEA glycine metabolic process
GO:0008168 IEA methyltransferase activity
GO:0009113 IEA purine nucleobase biosynthetic process
GO:0009156 IEA ribonucleoside monophosphate biosynthetic process
GO:0010033 IEA response to organic substance
GO:0010035 IEA response to inorganic substance
GO:0021549 IEA cerebellum development
GO:0021987 IEA cerebral cortex development
GO:0032259 IEA methylation
GO:0046654 IEA tetrahydrofolate biosynthetic process
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361093 GART-004 protein_coding Homo_sapiens 0 1201
ENST00000381815 GART-003 protein_coding Homo_sapiens 0 2819
ENST00000381831 GART-001 protein_coding Homo_sapiens 0 2815
ENST00000381839 GART-006 protein_coding Homo_sapiens 0 2819
ENST00000424203 GART-002 nonsense_mediated_decay Homo_sapiens 0 2808
ENST00000426819 GART-009 protein_coding Homo_sapiens 0 630
ENST00000430874 GART-007 protein_coding Homo_sapiens 0 664
ENST00000438059 GART-008 protein_coding Homo_sapiens 0 399
ENST00000441403 GART-010 protein_coding Homo_sapiens 0 398
ENST00000460305 GART-005 processed_transcript Homo_sapiens 0 324
ENST00000467575 GART-016 retained_intron Homo_sapiens 0 518
ENST00000476524 GART-011 retained_intron Homo_sapiens 0 551

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