C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphoribosylglycinamide formyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022962 Gart 10090 - 16:91621186-91646952 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023684 Gart-001 91621186-91646952 protein_coding
  ENSMUST00000120450 Gart-002 91633405-91646935 protein_coding
  ENSMUST00000156713 Gart-003 91621393-91643146 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023684ENSMUST00000120450ENSMUST00000156713
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023684 7.558±2.12 2.680±0.86 5.810±1.38 7.021±0.00 4.180±1.34 5.511±1.66 3.600±0.47 4.156±0.97 10.997±12.37 5.010±0.57 4.142±0.85 7.707±2.77 7.932±1.98 3.946±0.78
ENSMUST00000120450 N/A N/A N/A 2.918±0.43 1.860±0.00 N/A 3.148±0.49 N/A 4.644±1.76 2.079±0.00 4.342±0.34 6.686±0.89 4.936±3.17 N/A
ENSMUST00000156713 3.899±1.09 2.285±1.21 3.925±0.07 5.702±3.54 3.047±0.82 1.347±0.04 2.215±0.69 3.493±0.72 4.426±2.80 1.795±0.35 5.632±1.54 7.333±5.85 10.006±9.40 3.820±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EH CIL_0007EH_0002 CGP 16:91614257-91646952
CIL_000466 CIL_000466_0002 CGP 16:91621186-91679221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003360 IEA brainstem development
GO:0004637 IEA phosphoribosylamine-glycine ligase activity
GO:0004641 IEA phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 IEA phosphoribosylglycinamide formyltransferase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006189 IEA 'de novo' IMP biosynthetic process
GO:0006544 IEA glycine metabolic process
GO:0008168 IEA methyltransferase activity
GO:0009113 IEA purine nucleobase biosynthetic process
GO:0009156 IEA ribonucleoside monophosphate biosynthetic process
GO:0010033 IEA response to organic substance
GO:0010035 IEA response to inorganic substance
GO:0021549 IEA cerebellum development
GO:0021987 IEA cerebral cortex development
GO:0032259 IEA methylation
GO:0046654 IEA tetrahydrofolate biosynthetic process
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051855 gart phosphoribosylglycinamide formyltransferase protein_coding Danio_rerio
ENSG00000159131 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein_coding Homo_sapiens

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