C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023745 Prpf40b-010 ENSMUSG00000023007 10090 + 15:99303283-99316499 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000023745
Transcript ID Brain Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000023745 10.036±4.04 2.110±0.00 1.065±0.21 1.826±0.36 15.989±3.26 2.402±1.66 11.008±3.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261897 PRPF40B-002 protein_coding Homo_sapiens 0 3297
ENST00000335154 FMNL3-002 protein_coding Homo_sapiens 0 250
ENST00000380281 PRPF40B-001 protein_coding Homo_sapiens 0 3572
ENST00000546626 PRPF40B-014 retained_intron Homo_sapiens 0 353
ENST00000548399 PRPF40B-012 retained_intron Homo_sapiens 0 403
ENST00000548436 PRPF40B-009 retained_intron Homo_sapiens 0 789
ENST00000548825 PRPF40B-019 protein_coding Homo_sapiens 0 3585
ENST00000549547 PRPF40B-016 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000551111 PRPF40B-011 retained_intron Homo_sapiens 0 688
ENST00000551269 PRPF40B-017 retained_intron Homo_sapiens 0 250
ENST00000551418 PRPF40B-010 retained_intron Homo_sapiens 0 444

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