C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335154 FMNL3-002 ENSG00000161791 9606 - 12:49636499-49707414 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonMuscleOvaryPlacentaTestisENST00000335154
Transcript ID Adipose Adrenal Breast Colon Muscle Ovary Placenta Testis
ENST00000335154 7.996±0.00 1.838±0.00 0.760±0.00 0.224±0.00 0.974±0.00 2.889±0.94 1.065±0.34 2.851±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009O CIL_00009O_0001 CGP 12:49636499-49764934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0007010 IMP cytoskeleton organization
GO:0008360 IMP regulation of cell shape
GO:0016043 IEA cellular component organization
GO:0016477 IMP cell migration
GO:0017048 IEA Rho GTPase binding
GO:0030036 IEA actin cytoskeleton organization
GO:0032794 ISS GTPase activating protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120633 Fmnl3-003 protein_coding Mus_musculus 0 4215
ENSMUST00000088233 Fmnl3-001 protein_coding Mus_musculus 0 4119
ENSMUST00000081224 Fmnl3-002 protein_coding Mus_musculus 0 3306
ENSMUST00000126955 Prpf40b-015 protein_coding Mus_musculus 0 603
ENSMUST00000136980 Prpf40b-011 protein_coding Mus_musculus 0 603
ENSMUST00000145482 Prpf40b-001 protein_coding Mus_musculus 0 603
ENSMUST00000150641 Prpf40b-003 retained_intron Mus_musculus 0 603
ENSMUST00000118287 Prpf40b-006 protein_coding Mus_musculus 0 597
ENSMUST00000138036 Prpf40b-005 retained_intron Mus_musculus 0 590
ENSMUST00000124275 Prpf40b-009 retained_intron Mus_musculus 0 549
ENSMUST00000140368 Fmnl3-006 processed_transcript Mus_musculus 0 512
ENSMUST00000130575 Prpf40b-002 retained_intron Mus_musculus 0 396
ENSMUST00000150636 Prpf40b-008 protein_coding Mus_musculus 0 394
ENSMUST00000139330 Prpf40b-016 retained_intron Mus_musculus 0 344
ENSMUST00000139767 Fmnl3-005 retained_intron Mus_musculus 0 340
ENSMUST00000134034 Prpf40b-007 protein_coding Mus_musculus 0 255
ENSMUST00000153692 Prpf40b-014 retained_intron Mus_musculus 0 250
ENSMUST00000023745 Prpf40b-010 protein_coding Mus_musculus 0 250

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