C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAM pointed domain containing ets transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025054 Spdef-201 ENSMUSG00000024215 10090 - 17:27714447-27728951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000025054
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000025054 0.363±0.03 0.083±0.00 0.086±0.00 2.845±1.27 88.767±38.78 0.056±0.00 0.034±0.01 0.065±0.05 1.724±0.32 5.621±2.55 0.153±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LR CIL_0004LR_0003 CGP 17:27655509-27728951
CIL_0004LT CIL_0004LT_0003 CGP 17:27714352-27820558

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IDA nucleus
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0010454 IMP negative regulation of cell fate commitment
GO:0010455 IMP positive regulation of cell fate commitment
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060480 IDA lung goblet cell differentiation
GO:0060576 IMP intestinal epithelial cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374037 SPDEF-001 protein_coding Homo_sapiens 0 817
ENST00000544425 SPDEF-201 protein_coding Homo_sapiens 0 385

Loading