C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004LT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000029930-ENSDARG00000078075 CGP 7955 6:54235523-54303726
GeneTranscriptPositionBiotype
ENSDARG00000029930 (SPDEF)
SAM pointed domain containing ETS transcription factor 		ENSDART00000050483 (SPDEF-201) 54235523-54245367 protein_coding
ENSDART00000123955 (SPDEF-202) 54235523-54245232 protein_coding
ENSDARG00000078075 (C6H6orf106)
chromosome 6 open reading frame 106 		ENSDART00000114920 (C6H6orf106-201) 54277985-54303645 protein_coding
ENSDART00000156501 (C6H6orf106-001) 54280166-54303726 protein_coding
CIL_0004LT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124664-ENSG00000196821 CGP 9606 6:34537802-34696859
GeneTranscriptPositionBiotype
ENSG00000124664 (SPDEF)
SAM pointed domain containing ETS transcription factor 		ENST00000374037 (SPDEF-001) 34537802-34556314 protein_coding
ENST00000544425 (SPDEF-201) 34537802-34556333 protein_coding
ENSG00000196114 (RP3-391O22.3)
 ENST00000339867 (RP3-391O22.3-001) 34576258-34576656 processed_pseudogene
ENSG00000196821 (C6orf106)
chromosome 6 open reading frame 106 		ENST00000374021 (C6orf106-002) 34590509-34671956 protein_coding
ENST00000374023 (C6orf106-001) 34587288-34696847 protein_coding
ENST00000374026 (C6orf106-003) 34587288-34696859 protein_coding
ENSG00000216636 (RPL7P25)
ribosomal protein L7 pseudogene 25 		ENST00000404151 (RPL7P25-001) 34616538-34617258 processed_pseudogene
ENSG00000220643 (RP3-391O22.1)
 ENST00000404133 (RP3-391O22.1-001) 34686602-34687106 processed_pseudogene
ENSG00000265123 (RN7SL200P)
RNA, 7SL, cytoplasmic 200, pseudogene 		ENST00000585129 (RN7SL200P-201) 34685355-34685642 misc_RNA
CIL_0004LT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024215-ENSMUSG00000056692 CGP 10090 17:27714352-27820558
GeneTranscriptPositionBiotype
ENSMUSG00000024215 (Spdef)
SAM pointed domain containing ets transcription factor 		ENSMUST00000025054 (Spdef-201) 27714447-27728951 protein_coding
ENSMUST00000114870 (Spdef-001) 27714352-27728950 protein_coding
ENSMUST00000127622 (Spdef-003) 27714505-27717582 processed_transcript
ENSMUST00000138970 (Spdef-002) 27719992-27728924 protein_coding
ENSMUST00000167489 (Spdef-202) 27714449-27728889 protein_coding
ENSMUSG00000056692 (D17Wsu92e)
DNA segment, Chr 17, Wayne State University 92, expressed 		ENSMUST00000075076 (D17Wsu92e-002) 27767489-27820542 protein_coding
ENSMUST00000114859 (D17Wsu92e-003) 27751246-27820491 protein_coding
ENSMUST00000114863 (D17Wsu92e-001) 27751232-27820558 protein_coding
ENSMUSG00000080731 (Rps2-ps9)
ribosomal protein S2, pseudogene 9 		ENSMUST00000121414 (Rps2-ps9-001) 27784427-27785243 processed_pseudogene
ENSMUSG00000086485 (Gm15458)
predicted gene 15458 		ENSMUST00000156950 (Gm15458-001) 27735220-27741492 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004LT_0001ENSDARG00000029930ENSDART00000050483ENSDART00000123955ENSDARG00000078075ENSDART00000114920ENSDART00000156501CIL_0004LT_0002ENSG00000124664ENST00000374037ENST00000544425ENSG00000196114ENST00000339867ENSG00000196821ENST00000374021ENST00000374023ENST00000374026ENSG00000216636ENST00000404151ENSG00000220643ENST00000404133ENSG00000265123ENST00000585129CIL_0004LT_0003ENSMUSG00000024215ENSMUST00000025054ENSMUST00000114870ENSMUST00000127622ENSMUST00000138970ENSMUST00000167489ENSMUSG00000056692ENSMUST00000075076ENSMUST00000114859ENSMUST00000114863ENSMUSG00000080731ENSMUST00000121414ENSMUSG00000086485ENSMUST00000156950
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004LT_0001ENSDARG00000029930ENSDART00000050483ENSDART00000123955ENSDARG00000078075ENSDART00000114920ENSDART00000156501CIL_0004LT_0002ENSG00000124664ENST00000374037ENST00000544425ENSG00000196114ENST00000339867ENSG00000196821ENST00000374021ENST00000374023ENST00000374026ENSG00000216636ENST00000404151ENSG00000220643ENST00000404133ENSG00000265123ENST00000585129CIL_0004LT_0003ENSMUSG00000024215ENSMUST00000025054ENSMUST00000114870ENSMUST00000127622ENSMUST00000138970ENSMUST00000167489ENSMUSG00000056692ENSMUST00000075076ENSMUST00000114859ENSMUST00000114863ENSMUSG00000080731ENSMUST00000121414ENSMUSG00000086485ENSMUST00000156950
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029930 ENSDART00000050483 N/A N/A N/A 0.120±0.00 N/A N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000123955 N/A N/A N/A 0.307±0.00 N/A N/A 0.153±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000078075 ENSDART00000114920 N/A N/A N/A 13.253±7.87 N/A N/A 12.588±8.46 2.904±0.37 2.390±0.00 N/A 10.888±0.00 N/A N/A N/A
ENSDART00000156501 N/A N/A N/A 4.246±1.62 N/A N/A 4.455±1.80 4.733±0.00 1.456±0.00 N/A 7.053±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124664 ENST00000374037 N/A N/A N/A 0.560±0.40 3.075±1.96 4.786±2.42 N/A N/A N/A 2.322±0.00 N/A 1.138±0.96 N/A 0.402±0.00
ENST00000544425 0.047±0.00 0.017±0.00 N/A N/A 1.044±0.00 N/A 0.017±0.00 0.038±0.00 N/A 0.446±0.00 0.090±0.05 0.849±0.00 0.060±0.02 0.348±0.00
ENSG00000196114 ENST00000339867 0.237±0.00 0.503±0.00 0.299±0.00 0.369±0.00 0.208±0.00 1.465±1.34 0.190±0.04 0.263±0.00 0.334±0.00 0.300±0.00 0.310±0.01 0.590±0.00 N/A 0.235±0.00
ENSG00000196821 ENST00000374021 N/A N/A N/A 5.924±0.00 4.321±0.00 N/A 2.257±0.00 5.896±0.00 N/A N/A N/A N/A N/A 30.653±0.00
ENST00000374023 17.041±0.00 22.308±0.00 1.320±0.00 14.715±13.56 29.148±27.24 16.660±11.68 30.431±29.44 20.237±17.38 18.638±15.75 26.197±24.07 42.796±39.38 10.830±6.16 15.245±3.51 30.934±9.66
ENST00000374026 N/A N/A 0.767±0.00 N/A N/A N/A 0.719±0.00 N/A N/A N/A 6.461±4.18 3.574±0.45 N/A N/A
ENSG00000216636 ENST00000404151 N/A 0.077±0.00 0.601±0.00 0.054±0.00 0.530±0.51 N/A 0.068±0.00 N/A 0.130±0.00 0.072±0.02 0.027±0.00 0.025±0.00 N/A 0.014±0.00
ENSG00000220643 ENST00000404133 N/A 0.233±0.00 N/A N/A N/A N/A 0.043±0.00 0.136±0.00 N/A N/A N/A N/A N/A 0.041±0.00
ENSG00000265123 ENST00000585129 0.133±0.00 0.557±0.00 1.289±0.00 N/A 1.044±0.46 4.457±0.00 N/A 0.342±0.00 0.197±0.00 N/A 0.065±0.00 0.592±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024215 ENSMUST00000025054 0.363±0.03 0.083±0.00 0.086±0.00 N/A 2.845±1.27 88.767±38.78 0.056±0.00 0.034±0.01 0.065±0.05 1.724±0.32 N/A 5.621±2.55 0.153±0.06 N/A
ENSMUST00000114870 N/A 0.057±0.00 N/A 0.246±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.05 0.141±0.00
ENSMUST00000127622 N/A 0.084±0.06 N/A 0.334±0.00 1.641±0.00 N/A 0.010±0.00 0.124±0.10 0.046±0.03 N/A 0.118±0.03 1.909±0.83 0.627±0.35 1.174±0.52
ENSMUST00000138970 0.039±0.00 0.034±0.00 N/A N/A N/A N/A 0.046±0.00 N/A 0.032±0.02 N/A 0.123±0.00 N/A 0.227±0.00 N/A
ENSMUST00000167489 N/A 0.058±0.04 N/A 0.148±0.00 1.373±0.00 N/A 0.042±0.01 0.027±0.00 0.038±0.02 N/A 0.020±0.00 1.078±0.51 0.150±0.00 N/A
ENSMUSG00000056692 ENSMUST00000075076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.257±1.40 27.278±13.38
ENSMUST00000114859 28.398±7.38 77.475±9.56 11.815±0.06 12.273±7.15 34.110±8.89 25.264±4.98 27.260±3.20 46.687±6.81 32.089±25.67 42.311±1.30 18.453±2.55 20.091±6.07 10.838±2.24 4.651±0.31
ENSMUST00000114863 18.893±1.22 10.596±0.00 20.460±3.11 14.344±12.39 14.594±4.98 20.475±3.32 21.172±2.60 27.970±2.54 18.555±8.85 15.631±3.52 69.028±3.49 20.164±4.64 21.858±10.49 10.865±1.36
ENSMUSG00000080731 ENSMUST00000121414 0.352±0.00 0.746±0.10 0.384±0.03 0.333±0.24 0.624±0.12 0.385±0.20 0.161±0.04 0.325±0.07 0.228±0.12 0.605±0.00 0.068±0.00 0.715±0.51 0.330±0.23 0.191±0.11
ENSMUSG00000086485 ENSMUST00000156950 0.054±0.00 0.125±0.04 0.014±0.00 0.053±0.02 N/A 0.190±0.08 0.045±0.00 N/A 0.013±0.00 N/A 0.091±0.00 0.159±0.05 0.060±0.02 N/A

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