C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAM pointed domain containing ETS transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544425 SPDEF-201 ENSG00000124664 9606 - 6:34537802-34556333 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000544425
Transcript ID Adipose Adrenal Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000544425 0.047±0.00 0.017±0.00 1.044±0.00 0.017±0.00 0.038±0.00 0.446±0.00 0.090±0.05 0.849±0.00 0.060±0.02 0.348±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LR CIL_0004LR_0002 CGP 6:34466061-34556333
CIL_0004LT CIL_0004LT_0002 CGP 6:34537802-34696859

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IBA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007275 TAS multicellular organismal development
GO:0030154 IBA cell differentiation
GO:0043065 IDA positive regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167489 Spdef-202 protein_coding Mus_musculus 0 385
ENSMUST00000025054 Spdef-201 protein_coding Mus_musculus 0 385
ENSMUST00000127622 Spdef-003 processed_transcript Mus_musculus 0 385
ENSMUST00000114870 Spdef-001 protein_coding Mus_musculus 0 385

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