C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 52 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445902 VPS52-001 ENSG00000223501 9606 - 6:33250272-33271894 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverENST00000445902
Transcript ID Bladder Brain Heart Kidney Liver
ENST00000445902 4.954±0.00 11.997±5.68 7.852±0.00 16.669±0.00 9.875±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0010668 IEA ectodermal cell differentiation
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0048611 IEA embryonic ectodermal digestive tract development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025178 Vps52-001 protein_coding Mus_musculus 0 2726
ENSMUST00000173196 Vps52-007 protein_coding Mus_musculus 0 1829
ENSMUST00000174588 Vps52-006 retained_intron Mus_musculus 0 1013
ENSMUST00000173318 Vps52-005 retained_intron Mus_musculus 0 671
ENSMUST00000173445 Vps52-003 retained_intron Mus_musculus 0 562
ENSMUST00000172558 Vps52-004 retained_intron Mus_musculus 0 464
ENSMUST00000174447 Gm18733-001 transcribed_unprocessed_pseudogene Mus_musculus 0 353
ENSMUST00000172937 Gm18734-001 unprocessed_pseudogene Mus_musculus 0 219
ENSMUST00000174261 Gm20530-001 unprocessed_pseudogene Mus_musculus 4e-36 158

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