C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysyl oxidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025409 Lox-201 ENSMUSG00000024529 10090 - 18:52517238-52529708 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000025409
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000025409 26.955±5.98 6.732±1.05 2.560±0.38 1.321±1.38 21.342±10.84 5.577±1.23 1.166±0.42 2.643±1.06 0.360±0.30 24.982±8.98 26.646±12.14 1.524±0.99 0.321±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004B2 CIL_0004B2_0002 CGP 18:52465693-52529867
CIL_0004B1 CIL_0004B1_0002 CGP 18:52516069-52639830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0004720 IDA protein-lysine 6-oxidase activity
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005581 IDA collagen trimer
GO:0030199 IMP collagen fibril organization
GO:0030324 IMP lung development
GO:0048251 IMP elastic fiber assembly
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231004 LOX-001 protein_coding Homo_sapiens 0 1522
ENST00000503759 LOX-003 retained_intron Homo_sapiens 0 1123
ENST00000505593 LOX-005 processed_transcript Homo_sapiens 0 966
ENST00000508067 LOX-006 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000513319 LOX-002 processed_transcript Homo_sapiens 0 966

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