C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysyl oxidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231004 LOX-001 ENSG00000113083 9606 - 5:122063195-122078285 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000231004
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000231004 15.429±0.00 1.061±0.00 0.609±0.00 15.581±0.00 6.569±0.00 1.385±0.00 3.536±0.00 0.528±0.32 4.677±3.98 0.321±0.00 1.850±1.55 1.781±0.55 1.535±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004B3 CIL_0004B3_0001 CGP 5:121851955-122075570
CIL_0004B2 CIL_0004B2_0001 CGP 5:121961961-122078285
CIL_0004B1 CIL_0004B1_0001 CGP 5:122063195-122179617

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0004720 IEA protein-lysine 6-oxidase activity
GO:0005507 IEA copper ion binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005634 IEA nucleus
GO:0006464 TAS cellular protein modification process
GO:0009725 IEA response to hormone
GO:0016641 IEA oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
GO:0030198 TAS extracellular matrix organization
GO:0030199 IEA collagen fibril organization
GO:0030324 IEA lung development
GO:0042060 IEA wound healing
GO:0042493 IEA response to drug
GO:0048251 IEA elastic fiber assembly
GO:0048545 IEA response to steroid hormone
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025409 Lox-201 protein_coding Mus_musculus 0 1522
ENSMUST00000171470 Lox-202 protein_coding Mus_musculus 0 1485

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