C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: very low density lipoprotein receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025866 Vldlr-005 ENSMUSG00000024924 10090 + 19:27217458-27249763 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000025866
Transcript ID Adipose Bladder Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000025866 11.256±0.48 2.247±0.37 4.460±0.90 5.958±2.11 0.704±0.27 4.222±0.30 7.956±3.60 8.906±6.72 0.227±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051I CIL_00051I_0003 CGP 19:27216484-27337179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0016020 ISO membrane
GO:0043235 ISO receptor complex
GO:0045860 IGI positive regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382096 VLDLR-005 protein_coding Homo_sapiens 0 516
ENST00000382099 VLDLR-002 protein_coding Homo_sapiens 0 2176
ENST00000382100 VLDLR-001 protein_coding Homo_sapiens 0 2025
ENST00000478776 VLDLR-004 processed_transcript Homo_sapiens 0 418

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