C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: very low density lipoprotein receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382099 VLDLR-002 ENSG00000147852 9606 + 9:2622100-2654480 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382099
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382099 4.760±0.00 2.133±0.00 1.284±0.00 3.241±0.06 7.504±5.30 1.712±0.54 13.261±10.40 3.372±2.73 2.107±1.79 4.586±3.64 4.358±1.14 15.740±16.54 6.757±1.22 6.352±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051I CIL_00051I_0002 CGP 9:2621834-2730037

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0001948 IPI glycoprotein binding
GO:0005041 TAS low-density lipoprotein receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005905 IEA coated pit
GO:0006869 IEA lipid transport
GO:0006898 IDA receptor-mediated endocytosis
GO:0007165 TAS signal transduction
GO:0007399 TAS nervous system development
GO:0007613 TAS memory
GO:0008203 IEA cholesterol metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030229 IDA very-low-density lipoprotein particle receptor activity
GO:0034185 ISS apolipoprotein binding
GO:0034189 IDA very-low-density lipoprotein particle binding
GO:0034361 IEA very-low-density lipoprotein particle
GO:0034436 IDA glycoprotein transport
GO:0034437 IDA glycoprotein transporter activity
GO:0034447 IDA very-low-density lipoprotein particle clearance
GO:0038025 ISS reelin receptor activity
GO:0038026 ISS reelin-mediated signaling pathway
GO:0043235 IDA receptor complex
GO:0048306 IPI calcium-dependent protein binding
GO:1900006 ISS positive regulation of dendrite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172302 Vldlr-002 protein_coding Mus_musculus 0 4274
ENSMUST00000047645 Vldlr-006 protein_coding Mus_musculus 0 3563
ENSMUST00000167487 Vldlr-001 protein_coding Mus_musculus 0 3070
ENSMUST00000164509 Vldlr-003 retained_intron Mus_musculus 0 2390
ENSMUST00000025866 Vldlr-005 nonsense_mediated_decay Mus_musculus 0 2176
ENSMUST00000165761 Vldlr-009 protein_coding Mus_musculus 0 798
ENSMUST00000164746 Vldlr-007 protein_coding Mus_musculus 0 399
ENSMUST00000163729 Vldlr-008 processed_transcript Mus_musculus 0 326

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