C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: very low density lipoprotein receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382096 VLDLR-005 ENSG00000147852 9606 + 9:2621975-2643355 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENST00000382096
Transcript ID Placenta Testis
ENST00000382096 16.879±0.00 14.116±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051I CIL_00051I_0002 CGP 9:2621834-2730037

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047645 Vldlr-006 protein_coding Mus_musculus 0 778
ENSMUST00000164509 Vldlr-003 retained_intron Mus_musculus 0 710
ENSMUST00000167487 Vldlr-001 protein_coding Mus_musculus 0 538
ENSMUST00000172302 Vldlr-002 protein_coding Mus_musculus 0 538
ENSMUST00000025866 Vldlr-005 nonsense_mediated_decay Mus_musculus 0 516
ENSMUST00000164746 Vldlr-007 protein_coding Mus_musculus 0 399
ENSMUST00000163729 Vldlr-008 processed_transcript Mus_musculus 0 383

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