C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 4 (neoplastic transformation inhibitor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000280154 PDCD4-001 ENSG00000150593 9606 + 10:110871807-110900006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLungOvaryENST00000280154
Transcript ID Brain Colon Kidney Lung Ovary
ENST00000280154 2.065±0.00 5.957±0.00 1.262±0.00 2.482±0.00 5.897±1.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0001 VISTA 10:110384599-110985964
CIL_0000UM CIL_0000UM_0001 CGP 10:110644397-110900006

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IMP cytoplasm
GO:0005829 IDA cytosol
GO:0006915 NAS apoptotic process
GO:0007569 IDA cell aging
GO:0043508 ISS negative regulation of JUN kinase activity
GO:0045786 NAS negative regulation of cell cycle
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025931 Pdcd4-201 protein_coding Mus_musculus 0 2021
ENSMUST00000165617 Pdcd4-203 protein_coding Mus_musculus 0 1993
ENSMUST00000074371 Pdcd4-202 protein_coding Mus_musculus 0 1897
ENSMUST00000135402 Bbip1-201 protein_coding Mus_musculus 0 265

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