C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 2, subfamily c, polypeptide 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025966 Cyp2c55-001 ENSMUSG00000025002 10090 + 19:39007019-39042693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000025966
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000025966 0.050±0.01 0.147±0.03 0.014±0.00 0.048±0.01 0.120±0.03 473.916±122.48 0.083±0.03 2.597±3.35 0.979±0.92 0.095±0.10 0.090±0.09 0.083±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067G CIL_00067G_0002 CGP 19:38930915-39042693
CIL_0007H6 CIL_0007H6_000D CGP 19:39007019-39093944

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0008392 IDA arachidonic acid epoxygenase activity
GO:0016020 IEA membrane
GO:0019369 IDA arachidonic acid metabolic process
GO:0020037 IEA heme binding
GO:0043651 IDA linoleic acid metabolic process
GO:0055114 IEA oxidation-reduction process
GO:0070330 IEA aromatase activity
GO:0071614 IDA linoleic acid epoxygenase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285979 CYP2C18-001 protein_coding Homo_sapiens 0 1271
ENST00000339022 CYP2C18-002 protein_coding Homo_sapiens 0 536
ENST00000371270 CYP2C8-001 protein_coding Homo_sapiens 0 1053
ENST00000464755 RP11-400G3.5-001 nonsense_mediated_decay Homo_sapiens 0 848
ENST00000479946 CYP2C8-002 retained_intron Homo_sapiens 0 632
ENST00000490994 CYP2C8-008 nonsense_mediated_decay Homo_sapiens 0 913
ENST00000525991 CYP2C8-007 nonsense_mediated_decay Homo_sapiens 0 835
ENST00000526814 CYP2C8-005 retained_intron Homo_sapiens 0 835
ENST00000527420 CYP2C8-003 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000527953 CYP2C8-006 retained_intron Homo_sapiens 0 632
ENST00000533320 CYP2C8-004 retained_intron Homo_sapiens 0 835
ENST00000535898 CYP2C8-201 protein_coding Homo_sapiens 0 835
ENST00000539050 CYP2C8-202 protein_coding Homo_sapiens 0 913
ENST00000623108 CYP2C8-203 protein_coding Homo_sapiens 0 913

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