C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 2, subfamily C, polypeptide 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339022 CYP2C18-002 ENSG00000108242 9606 + 10:94683775-94735574 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000339022
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000339022 0.047±0.00 0.185±0.02 0.100±0.00 0.009±0.00 0.237±0.00 24.934±0.00 0.177±0.00 2.613±0.00 0.044±0.02 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067G CIL_00067G_0001 CGP 10:94501434-94736190
CIL_0007H6 CIL_0007H6_0002 CGP 10:94683621-94853073

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004497 TAS monooxygenase activity
GO:0005506 IEA iron ion binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006805 TAS xenobiotic metabolic process
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019825 TAS oxygen binding
GO:0020037 IEA heme binding
GO:0044281 TAS small molecule metabolic process
GO:0055114 IEA oxidation-reduction process
GO:0070330 IEA aromatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068094 Cyp2c50-002 protein_coding Mus_musculus 0 1016
ENSMUST00000003137 Cyp2c29-001 protein_coding Mus_musculus 0 571
ENSMUST00000176624 Cyp2c29-003 protein_coding Mus_musculus 0 571
ENSMUST00000080171 Cyp2c50-001 protein_coding Mus_musculus 0 551
ENSMUST00000035488 Cyp2c38-001 protein_coding Mus_musculus 0 549
ENSMUST00000124391 Cyp2c50-003 retained_intron Mus_musculus 0 542
ENSMUST00000025966 Cyp2c55-001 protein_coding Mus_musculus 0 536
ENSMUST00000048959 Cyp2c54-201 protein_coding Mus_musculus 0 529
ENSMUST00000025968 Cyp2c39-001 protein_coding Mus_musculus 0 505
ENSMUST00000099472 Cyp2c68-001 protein_coding Mus_musculus 0 449
ENSMUST00000160476 Cyp2c40-001 protein_coding Mus_musculus 0 435
ENSMUST00000162630 Cyp2c40-002 nonsense_mediated_decay Mus_musculus 0 435
ENSMUST00000067328 Cyp2c67-001 protein_coding Mus_musculus 0 427
ENSMUST00000168838 Cyp2c69-201 protein_coding Mus_musculus 0 418
ENSMUST00000177087 Cyp2c29-002 nonsense_mediated_decay Mus_musculus 0 409
ENSMUST00000175960 Cyp2c53-ps-001 transcribed_unprocessed_pseudogene Mus_musculus 0 255
ENSMUST00000176493 Cyp2c53-ps-002 processed_transcript Mus_musculus 0 255

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