C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464755 RP11-400G3.5-001 ENSG00000276490 9606 + 10:94688154-94853073 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLungOvaryENST00000464755
Transcript ID Brain Breast Lung Ovary
ENST00000464755 0.047±0.00 0.035±0.00 0.227±0.00 0.413±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067G CIL_00067G_0001 CGP 10:94501434-94736190
CIL_0007H6 CIL_0007H6_0002 CGP 10:94683621-94853073
CIL_0007H6 CIL_0007H6_000A CGP 10:94688154-94853260

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 IEA heme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176624 Cyp2c29-003 protein_coding Mus_musculus 0 1088
ENSMUST00000087234 Cyp2c66-001 protein_coding Mus_musculus 0 1042
ENSMUST00000087236 Cyp2c65-001 protein_coding Mus_musculus 0 1013
ENSMUST00000003137 Cyp2c29-001 protein_coding Mus_musculus 0 974
ENSMUST00000146494 Cyp2c66-002 nonsense_mediated_decay Mus_musculus 0 942
ENSMUST00000080171 Cyp2c50-001 protein_coding Mus_musculus 0 900
ENSMUST00000025968 Cyp2c39-001 protein_coding Mus_musculus 0 891
ENSMUST00000035488 Cyp2c38-001 protein_coding Mus_musculus 0 885
ENSMUST00000025966 Cyp2c55-001 protein_coding Mus_musculus 0 848
ENSMUST00000048959 Cyp2c54-201 protein_coding Mus_musculus 0 839
ENSMUST00000177087 Cyp2c29-002 nonsense_mediated_decay Mus_musculus 0 745
ENSMUST00000067328 Cyp2c67-001 protein_coding Mus_musculus 0 612
ENSMUST00000099472 Cyp2c68-001 protein_coding Mus_musculus 0 599
ENSMUST00000160476 Cyp2c40-001 protein_coding Mus_musculus 0 593
ENSMUST00000168838 Cyp2c69-201 protein_coding Mus_musculus 0 588
ENSMUST00000162630 Cyp2c40-002 nonsense_mediated_decay Mus_musculus 0 449
ENSMUST00000124391 Cyp2c50-003 retained_intron Mus_musculus 0 361
ENSMUST00000068094 Cyp2c50-002 protein_coding Mus_musculus 0 361
ENSMUST00000162434 Cyp2c40-003 processed_transcript Mus_musculus 1.99965e-42 178

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