C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 2, subfamily C, polypeptide 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000285979 CYP2C18-001 ENSG00000108242 9606 + 10:94683621-94736190 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverLungOvaryPlacentaTestisENST00000285979
Transcript ID Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENST00000285979 0.020±0.00 0.088±0.05 19.351±19.21 21.440±0.00 0.054±0.00 0.774±0.53 0.051±0.02 0.047±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067G CIL_00067G_0001 CGP 10:94501434-94736190
CIL_0007H6 CIL_0007H6_0002 CGP 10:94683621-94853073

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004497 TAS monooxygenase activity
GO:0005506 IEA iron ion binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006805 TAS xenobiotic metabolic process
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019825 TAS oxygen binding
GO:0020037 IEA heme binding
GO:0044281 TAS small molecule metabolic process
GO:0055114 IEA oxidation-reduction process
GO:0070330 IEA aromatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025966 Cyp2c55-001 protein_coding Mus_musculus 0 1271
ENSMUST00000003137 Cyp2c29-001 protein_coding Mus_musculus 0 1182
ENSMUST00000087234 Cyp2c66-001 protein_coding Mus_musculus 0 1120
ENSMUST00000087236 Cyp2c65-001 protein_coding Mus_musculus 0 1118
ENSMUST00000080171 Cyp2c50-001 protein_coding Mus_musculus 0 1105
ENSMUST00000035488 Cyp2c38-001 protein_coding Mus_musculus 0 1081
ENSMUST00000048959 Cyp2c54-201 protein_coding Mus_musculus 0 1077
ENSMUST00000025968 Cyp2c39-001 protein_coding Mus_musculus 0 1064
ENSMUST00000176624 Cyp2c29-003 protein_coding Mus_musculus 0 1059
ENSMUST00000177087 Cyp2c29-002 nonsense_mediated_decay Mus_musculus 0 948
ENSMUST00000146494 Cyp2c66-002 nonsense_mediated_decay Mus_musculus 0 896
ENSMUST00000067328 Cyp2c67-001 protein_coding Mus_musculus 0 756
ENSMUST00000099472 Cyp2c68-001 protein_coding Mus_musculus 0 745
ENSMUST00000160476 Cyp2c40-001 protein_coding Mus_musculus 0 734
ENSMUST00000168838 Cyp2c69-201 protein_coding Mus_musculus 0 723
ENSMUST00000068094 Cyp2c50-002 protein_coding Mus_musculus 0 551
ENSMUST00000124391 Cyp2c50-003 retained_intron Mus_musculus 0 544
ENSMUST00000162630 Cyp2c40-002 nonsense_mediated_decay Mus_musculus 0 455
ENSMUST00000175960 Cyp2c53-ps-001 transcribed_unprocessed_pseudogene Mus_musculus 0 255
ENSMUST00000176493 Cyp2c53-ps-002 processed_transcript Mus_musculus 0 255

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