C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slit homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025993 Slit1-001 ENSMUSG00000025020 10090 - 19:41600259-41743665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000025993
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000025993 0.979±0.23 5.038±0.00 0.043±0.01 0.096±0.02 0.008±0.00 0.044±0.02 0.064±0.06 0.017±0.01 0.236±0.08 5.228±7.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SO CIL_0008SO_0002 VISTA 19:41258217-41859329
CIL_0003F3 CIL_0003F3_0002 CGP 19:41600257-41802084

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005509 IEA calcium ion binding
GO:0005615 IDA extracellular space
GO:0007409 IDA axonogenesis
GO:0007411 IGI axon guidance
GO:0007420 IEA brain development
GO:0008045 IEA motor neuron axon guidance
GO:0021510 IEA spinal cord development
GO:0021772 IGI olfactory bulb development
GO:0022028 IMP tangential migration from the subventricular zone to the olfactory bulb
GO:0022029 IGI telencephalon cell migration
GO:0031290 IGI retinal ganglion cell axon guidance
GO:0033563 IGI dorsal/ventral axon guidance
GO:0040023 IDA establishment of nucleus localization
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0048495 IPI Roundabout binding
GO:0048812 IGI neuron projection morphogenesis
GO:0048843 IEA negative regulation of axon extension involved in axon guidance
GO:0048846 IEA axon extension involved in axon guidance
GO:0050919 IMP negative chemotaxis
GO:0051964 ISS negative regulation of synapse assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066080 slit1a-201 protein_coding Danio_rerio 0 1382
ENSDART00000128969 slit1a-001 protein_coding Danio_rerio 0 1382
ENST00000266058 SLIT1-001 protein_coding Homo_sapiens 0 5845
ENST00000314867 SLIT1-006 protein_coding Homo_sapiens 0 1690
ENST00000371041 SLIT1-004 protein_coding Homo_sapiens 0 1400
ENST00000371070 SLIT1-003 protein_coding Homo_sapiens 0 5313
ENST00000456008 SLIT1-009 processed_transcript Homo_sapiens 0 592

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