C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slit homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000266058 SLIT1-001 ENSG00000187122 9606 - 10:96998038-97185920 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryENST00000266058
Transcript ID Brain Ovary
ENST00000266058 5.727±1.20 2.279±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SO CIL_0008SO_0001 VISTA 10:96654859-97255972
CIL_0003F3 CIL_0003F3_0001 CGP 10:96998038-97292637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 NAS:IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005615 NAS extracellular space
GO:0007409 IEA axonogenesis
GO:0007411 IDA axon guidance
GO:0007420 IEA brain development
GO:0008045 IMP motor neuron axon guidance
GO:0021510 IEA spinal cord development
GO:0021772 IEA olfactory bulb development
GO:0022028 IEA tangential migration from the subventricular zone to the olfactory bulb
GO:0022029 IEA telencephalon cell migration
GO:0031290 IEA retinal ganglion cell axon guidance
GO:0033563 IEA dorsal/ventral axon guidance
GO:0040023 IEA establishment of nucleus localization
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0048495 IPI Roundabout binding
GO:0048812 IEA neuron projection morphogenesis
GO:0048843 IEA negative regulation of axon extension involved in axon guidance
GO:0048846 IDA axon extension involved in axon guidance
GO:0048853 NAS forebrain morphogenesis
GO:0050919 IDA negative chemotaxis
GO:0051964 ISS negative regulation of synapse assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025993 Slit1-001 protein_coding Mus_musculus 0 5845
ENSMUST00000169141 Slit1-002 protein_coding Mus_musculus 0 5454
ENSMUST00000166496 Slit1-004 protein_coding Mus_musculus 0 5312
ENSDART00000066080 slit1a-201 protein_coding Danio_rerio 0 1415
ENSDART00000128969 slit1a-001 protein_coding Danio_rerio 0 1415
ENSMUST00000171586 Slit1-003 protein_coding Mus_musculus 0 952
ENSMUST00000169416 Slit1-005 retained_intron Mus_musculus 0 527

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