C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sideroflexin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026011 Sfxn2-201 ENSMUSG00000025036 10090 + 19:46573365-46596898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026011
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026011 2.694±0.45 1.165±0.52 1.503±0.08 3.258±1.98 1.586±0.53 1.337±0.35 0.232±0.05 9.340±1.07 8.312±2.61 1.752±0.81 1.165±0.38 2.196±0.97 2.122±1.59 0.487±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MQ CIL_0008MQ_0002 VISTA 19:46318498-46919738
CIL_0001HQ CIL_0001HQ_0003 CGP 19:46531109-46596898
CIL_00065W CIL_00065W_0002 CGP 19:46573365-46657389

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 ISA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0008150 ND biological_process
GO:0008324 IEA cation transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0055072 IEA iron ion homeostasis
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369893 SFXN2-001 protein_coding Homo_sapiens 0 1096
ENST00000459894 SFXN2-002 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000480358 SFXN2-005 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000602287 SFXN2-014 retained_intron Homo_sapiens 0 529
ENST00000602439 SFXN2-007 protein_coding Homo_sapiens 0 466
ENST00000602544 SFXN2-012 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000602660 SFXN2-015 retained_intron Homo_sapiens 0 623
ENST00000602670 SFXN2-011 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000602764 SFXN2-008 protein_coding Homo_sapiens 0 496
ENST00000602785 SFXN2-009 processed_transcript Homo_sapiens 0 399
ENST00000602831 SFXN2-010 protein_coding Homo_sapiens 0 616
ENST00000602868 SFXN2-013 protein_coding Homo_sapiens 0 619

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