C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sideroflexin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480358 SFXN2-005 ENSG00000156398 9606 + 10:102714627-102739195 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyOvaryPlacentaTestisENST00000480358
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Ovary Placenta Testis
ENST00000480358 0.715±0.00 2.354±0.00 0.239±0.00 0.800±0.00 0.496±0.00 3.798±0.98 3.163±0.00 2.205±1.93 0.407±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MQ CIL_0008MQ_0001 VISTA 10:102469546-103070739
CIL_0001HQ CIL_0001HQ_0002 CGP 10:102673731-102743492
CIL_00065W CIL_00065W_0001 CGP 10:102714538-102816267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006811 IEA ion transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0015075 IEA ion transmembrane transporter activity
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026011 Sfxn2-201 protein_coding Mus_musculus 0 527

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