C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000071409-ENSDARG00000017960 CGP 7955 12:35462650-35485121
GeneTranscriptPositionBiotype
ENSDARG00000017960 (sfxn2)
sideroflexin 2 		ENSDART00000036649 (sfxn2-001) 35471301-35485121 protein_coding
ENSDART00000075416 (sfxn2-201) 35471398-35485118 protein_coding
ENSDART00000125745 (sfxn2-002) 35471378-35476316 nonsense_mediated_decay
ENSDARG00000071409 (arl3)
ADP-ribosylation factor-like 3 		ENSDART00000105545 (arl3-001) 35462650-35469034 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001HQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138175-ENSG00000156398 CGP 9606 10:102673731-102743492
GeneTranscriptPositionBiotype
ENSG00000138175 (ARL3)
ADP-ribosylation factor-like 3 		ENST00000260746 (ARL3-001) 102673731-102714407 protein_coding
ENSG00000156398 (SFXN2)
sideroflexin 2 		ENST00000369893 (SFXN2-001) 102714540-102743492 protein_coding
ENST00000459894 (SFXN2-002) 102714636-102739189 nonsense_mediated_decay
ENST00000480358 (SFXN2-005) 102714627-102739195 nonsense_mediated_decay
ENST00000602287 (SFXN2-014) 102714601-102728576 retained_intron
ENST00000602439 (SFXN2-007) 102714636-102728485 protein_coding
ENST00000602544 (SFXN2-012) 102714631-102728511 nonsense_mediated_decay
ENST00000602647 (SFXN2-006) 102714635-102726657 protein_coding
ENST00000602660 (SFXN2-015) 102714659-102729506 retained_intron
ENST00000602670 (SFXN2-011) 102714638-102727769 nonsense_mediated_decay
ENST00000602764 (SFXN2-008) 102714636-102728503 protein_coding
ENST00000602785 (SFXN2-009) 102714636-102727702 processed_transcript
ENST00000602831 (SFXN2-010) 102714538-102729390 protein_coding
ENST00000602868 (SFXN2-013) 102726500-102729392 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0001HQ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025035-ENSMUSG00000025036 CGP 10090 19:46531109-46596898
GeneTranscriptPositionBiotype
ENSMUSG00000025035 (Arl3)
ADP-ribosylation factor-like 3 		ENSMUST00000026009 (Arl3-201) 46531109-46573085 protein_coding
ENSMUSG00000025036 (Sfxn2)
sideroflexin 2 		ENSMUST00000026011 (Sfxn2-201) 46573365-46596898 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HQ_0001ENSDARG00000017960ENSDART00000036649ENSDART00000075416ENSDART00000125745ENSDARG00000071409ENSDART00000105545CIL_0001HQ_0002ENSG00000138175ENST00000260746ENSG00000156398ENST00000369893ENST00000459894ENST00000480358ENST00000602287ENST00000602439ENST00000602544ENST00000602647ENST00000602660ENST00000602670ENST00000602764ENST00000602785ENST00000602831ENST00000602868CIL_0001HQ_0003ENSMUSG00000025035ENSMUST00000026009ENSMUSG00000025036ENSMUST00000026011
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HQ_0001ENSDARG00000017960ENSDART00000036649ENSDART00000075416ENSDARG00000071409ENSDART00000105545CIL_0001HQ_0002ENSG00000138175ENST00000260746ENSG00000156398ENST00000369893ENST00000459894ENST00000480358ENST00000602785CIL_0001HQ_0003ENSMUSG00000025035ENSMUST00000026009ENSMUSG00000025036ENSMUST00000026011
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017960 ENSDART00000036649 N/A N/A N/A 1.380±0.37 N/A N/A 2.445±0.00 6.497±0.00 1.450±0.00 N/A 3.462±0.00 N/A N/A N/A
ENSDART00000075416 N/A N/A N/A 1.891±1.16 N/A N/A 4.755±0.27 14.130±0.41 N/A N/A N/A N/A N/A N/A
ENSDART00000125745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000071409 ENSDART00000105545 N/A N/A N/A 39.171±4.05 N/A N/A 13.292±7.09 8.315±2.78 0.257±0.00 N/A 2.684±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138175 ENST00000260746 5.864±0.00 3.899±0.00 0.894±0.00 12.214±6.84 2.526±1.52 6.224±5.29 3.220±2.75 5.307±4.84 1.650±0.05 4.749±3.87 1.292±1.18 8.289±5.97 5.119±2.44 20.167±4.96
ENSG00000156398 ENST00000369893 0.136±0.00 0.435±0.00 2.468±0.00 0.071±0.00 N/A N/A N/A 0.836±0.05 0.148±0.00 N/A N/A 0.350±0.13 0.312±0.21 N/A
ENST00000459894 0.717±0.00 1.441±0.00 3.185±0.00 N/A 0.668±0.00 N/A 0.387±0.00 5.359±0.00 1.713±1.30 0.596±0.00 0.094±0.00 2.026±1.08 1.118±0.24 N/A
ENST00000480358 0.715±0.00 2.354±0.00 N/A 0.239±0.00 0.800±0.00 0.496±0.00 N/A 3.798±0.98 N/A N/A N/A 3.163±0.00 2.205±1.93 0.407±0.19
ENST00000602287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.812±0.00 N/A N/A N/A
ENST00000602831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025035 ENSMUST00000026009 19.471±1.21 10.056±0.66 33.563±2.70 108.409±75.70 9.179±3.38 5.133±0.92 7.602±1.38 28.604±4.83 15.838±8.82 16.833±1.30 12.813±1.60 27.215±28.37 20.937±8.01 184.826±73.34
ENSMUSG00000025036 ENSMUST00000026011 2.694±0.45 1.165±0.52 1.503±0.08 3.258±1.98 1.586±0.53 1.337±0.35 0.232±0.05 9.340±1.07 8.312±2.61 1.752±0.81 1.165±0.38 2.196±0.97 2.122±1.59 0.487±0.24

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