C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycomb group ring finger 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026032 Pcgf6-201 ENSMUSG00000025050 10090 - 19:47033619-47050845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026032
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026032 4.638±2.69 4.158±1.64 6.948±1.23 6.019±4.36 2.407±0.38 3.281±1.66 0.944±0.11 3.163±1.69 3.168±1.02 1.060±0.21 1.356±0.38 6.265±2.95 5.522±2.82 14.935±4.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HJ CIL_0001HJ_0003 CGP 19:47014698-47050845
CIL_00065U CIL_00065U_0002 CGP 19:47033619-47083479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0019904 ISA protein domain specific binding
GO:0031519 ISS PcG protein complex
GO:0035102 ISS PRC1 complex
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337211 PCGF6-003 protein_coding Homo_sapiens 0 488
ENST00000369847 PCGF6-001 protein_coding Homo_sapiens 0 1256
ENST00000490296 PCGF6-002 processed_transcript Homo_sapiens 0 1155
ENST00000492755 PCGF6-006 retained_intron Homo_sapiens 3e-40 169
ENST00000595406 PCGF7P-001 processed_pseudogene Homo_sapiens 0 1098
ENST00000613730 PCGF7P-001 processed_pseudogene Homo_sapiens 0 1098

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