C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | sodium channel and clathrin linker 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000439369  |
SCLT1-004 |
ENSG00000151466 |
9606 | - |
4:128884346-129093410  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00001N | CIL_00001N_0001 | CGP | 4:128269237-128875224 |
| CIL_00001M | CIL_00001M_0001 | CGP | 4:128809623-129093607 |
| CIL_0006YI | CIL_0006YI_0002 | CGP | 4:128864921-129116640 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005737 | IDA | cytoplasm |
| GO:0005813 | IDA | centrosome |
| GO:0005814 | IDA | centriole |
| GO:0015630 | IDA | microtubule cytoskeleton |
| GO:0042384 | IMP | cilium assembly |
| GO:0070062 | IDA | extracellular vesicular exosome |
| GO:0097539 | IDA | ciliary transition fiber |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000148769
|
Sclt1-002 | nonsense_mediated_decay | Mus_musculus | 0 | 462 |
|
ENSMUST00000146125
|
Sclt1-004 | nonsense_mediated_decay | Mus_musculus | 0 | 462 |
|
ENSMUST00000026866
|
Sclt1-001 | protein_coding | Mus_musculus | 0 | 462 |
|
ENSMUST00000142908
|
Sclt1-009 | retained_intron | Mus_musculus | 0 | 327 |
|
ENSMUST00000140373
|
Sclt1-006 | retained_intron | Mus_musculus | 0 | 263 |
