C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HGF-regulated tyrosine kinase substrate
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026900 Hgs-201 ENSMUSG00000025793 10090 + 11:120467635-120483984 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026900
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026900 14.198±4.83 50.449±4.42 9.335±4.23 36.757±4.91 19.344±10.35 35.701±6.97 4.891±3.71 16.917±2.92 12.159±6.71 23.156±4.03 1.984±0.77 36.386±16.46 8.369±3.13 56.844±20.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BA CIL_0003BA_0002 CGP 11:120464866-120483984
CIL_0004BU CIL_0004BU_0002 CGP 11:120467635-120489065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005769 IEA early endosome
GO:0005829 IEA cytosol
GO:0006622 IEA protein targeting to lysosome
GO:0006886 IEA intracellular protein transport
GO:0008333 IEA endosome to lysosome transport
GO:0010324 IEA membrane invagination
GO:0010628 IEA positive regulation of gene expression
GO:0016020 IEA membrane
GO:0019904 IEA protein domain specific binding
GO:0030141 IEA secretory granule
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046426 IEA negative regulation of JAK-STAT cascade
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome
GO:0072657 IEA protein localization to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000019661 hgs-201 protein_coding Danio_rerio 0 680
ENSDART00000131913 hgs-001 protein_coding Danio_rerio 0 680
ENSDART00000056622 hgs-202 protein_coding Danio_rerio 0 514
ENST00000329138 HGS-001 protein_coding Homo_sapiens 0 2682
ENST00000571237 HGS-013 protein_coding Homo_sapiens 0 640
ENST00000571518 HGS-003 protein_coding Homo_sapiens 0 444
ENST00000572392 HGS-008 protein_coding Homo_sapiens 0 603
ENST00000573080 HGS-007 retained_intron Homo_sapiens 1.99965e-42 178
ENST00000576087 HGS-010 retained_intron Homo_sapiens 0 496
ENST00000576393 HGS-009 retained_intron Homo_sapiens 0 662
ENST00000576498 HGS-004 retained_intron Homo_sapiens 0 911
ENST00000577012 HGS-011 protein_coding Homo_sapiens 0 496

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