C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: IscU iron-sulfur cluster scaffold homolog (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026937 Iscu-001 ENSMUSG00000025825 10090 + 5:113772748-113778288 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026937 113.896±31.23 218.038±23.65 111.743±12.87 38.933±16.53 67.817±17.98 38.105±4.08 89.922±6.43 206.075±10.11 62.752±9.22 71.473±11.00 79.129±3.71 73.396±15.73 44.529±5.33 68.155±16.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001M7 CIL_0001M7_0002 CGP 5:113742446-113778288
CIL_0007IZ CIL_0007IZ_0003 CGP 5:113772748-113800516

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 IEA cytosol
GO:0016226 IEA iron-sulfur cluster assembly
GO:0032947 IEA protein complex scaffold
GO:0051536 IEA iron-sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311893 ISCU-001 protein_coding Homo_sapiens 0 625
ENST00000392807 ISCU-006 protein_coding Homo_sapiens 0 468
ENST00000431221 ISCU-004 protein_coding Homo_sapiens 0 534
ENST00000535405 ISCU-008 retained_intron Homo_sapiens 0 377
ENST00000535729 ISCU-003 protein_coding Homo_sapiens 0 534
ENST00000539580 ISCU-005 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000539593 ISCU-007 protein_coding Homo_sapiens 0 531
ENST00000545932 ISCU-002 retained_intron Homo_sapiens 0 377
ENST00000547005 ISCU-012 protein_coding Homo_sapiens 0 534
ENST00000552072 ISCU-013 retained_intron Homo_sapiens 0 534

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