C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iron-sulfur cluster assembly enzyme
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547005 ISCU-012 ENSG00000136003 9606 + 12:108562601-108569099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyPlacentaTestisENST00000547005
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Placenta Testis
ENST00000547005 27.359±0.00 27.095±0.00 55.118±0.00 32.675±0.00 23.813±0.00 36.734±0.00 20.675±0.00 40.919±9.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001M7 CIL_0001M7_0001 CGP 12:108522580-108569384
CIL_0007IZ CIL_0007IZ_0002 CGP 12:108562582-108598320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0016226 IEA iron-sulfur cluster assembly
GO:0051536 IEA iron-sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112312 Iscu-003 protein_coding Mus_musculus 0 534
ENSMUST00000112311 Iscu-002 protein_coding Mus_musculus 0 534
ENSMUST00000026937 Iscu-001 protein_coding Mus_musculus 0 534
ENSMUST00000025669 Gm16437-201 processed_pseudogene Mus_musculus 0 486
ENSMUST00000134881 Iscu-005 nonsense_mediated_decay Mus_musculus 0 375
ENSMUST00000123616 Iscu-004 nonsense_mediated_decay Mus_musculus 0 375
ENSMUST00000145592 Iscu-007 protein_coding Mus_musculus 0 374
ENSMUST00000145778 Iscu-006 protein_coding Mus_musculus 5e-35 152

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